Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2392 ATGGGAAGAGGCAGAGGAGCTGCGGCTCTGAAACCCACGGCGGCGGTTGCGGCGGCGGAGGTAAACGGATCAGGGCCGATGCCAGTATTGAAGGAAGTTAGATACCGCGGCGTGAGGAAGAGACCGTGGGGAAGATTCGCCGCTGAAATCAGAGACCCGTTGAAGAAAGCYAGGGTTTGGCTCGGAACCTTCGATTCCGCCGAGGACGCCGCACGCGCTTACGACGCCGCCGCAAGAACACTCCGGGGACCAAAAGCCAAGACCAATTTTCCTCTCTCTTCTCCTTTTTGCTACCAGAACAACCCCCATAGCGCCGTCGTGGATCCTTACTACTACGCCGCCGTAAACGGCGGCGCCGGCGGCGGGTTTCAGGAGAGTCCGGTGAACCCTCAGAGGCCGACGTGCAGTGGAATGAGCAGCACAGTGGAATCGTTCAGCGGGCCGCGGACGATGAAGGCGCCGCCGTGTACGGTGGCGCCGGCGACGGTAGGTAGGAGGTACCCTCGGACTCCTCCAGTTGTGCCAGAAGATTGCCATAGTGATTGTGATTCTTCATCGTCGGTGGTTGACGACGGCGATAATATTGTTTCGTCGTCGTTTAGAGCGCCGTTGCCGTTTGATCTCAACGCGCCGCCGTTGGAGGGTGGCGATGATGATGAGCTTCGCTGCACCGCCTTGTGCCTTTGA 687 0.5953 MGRGRGAAALKPTAAVAAAEVNGSGPMPVLKEVRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPLSSPFCYQNNPHSAVVDPYYYAAVNGGAGGGFQESPVNPQRPTCSGMSSTVESFSGPRTMKAPPCTVAPATVGRRYPRTPPVVPEDCHSDCDSSSSVVDDGDNIVSSSFRAPLPFDLNAPPLEGGDDDELRCTALCL* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2392 228 PANTHER ETHYLENE RESPONSE FACTOR 22 211 - -
Amo20g2392 228 MobiDBLite consensus disorder prediction 127 147 - -
Amo20g2392 228 SUPERFAMILY DNA-binding domain 34 93 IPR016177 GO:0003677
Amo20g2392 228 MobiDBLite consensus disorder prediction 127 150 - -
Amo20g2392 228 CDD AP2 34 93 IPR001471 GO:0003700|GO:0006355
Amo20g2392 228 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Amo20g2392 228 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Amo20g2392 228 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Amo20g2392 228 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 211 - -
Amo20g2392 228 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Amo20g2392 228 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Amo20g2392 228 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2392 Amo-Chr20 111862752 111864081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2392 1 228 AP2-EREBP Transcription Factor Family AT1G50640 58.678 4.93e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo20g2392 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2392 K09286 - mnt:21395673 238.039