Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2380 ATGGCTTCTAGATTGGTGCTTGCTTTGGCTATCTTTGCCCTTGTATTGGGGAATGGCAATGCGCAACTTTCCACAAACTTCTACTCTAGTTCATGCCCCAAACTCTTTTCCACTGTGAGATCCACAGTTCAATCTGCCATATCAAAGGAAGCCCGTATGGGTGCTTCTCTTCTCCGCTTGTTCTTCCATGATTGCTTTGTCAATGGATGCGATGGATCGATTCTACTAGACGACACATCAAACTTCACCGGAGAGAAGAACGCAAACCCAAACAGGAACTCAGCCCGTGGCTTCGAAGTGATTGACGCCATCAAAACTGCCGTTGAGAAAGTCTGCCCTGGTGTTGTCTCATGCGCTGATATCCTCGCCGTTGCTGCCAGAGACTCTGTTAATATCCTTAAAGGCCCAACTTGGAACGTCAAACTTGGAAGAAGAGACGCCAGAACAGCCAGCCAGTCCGCCGCCAACAACGGCATCCCTCCACCCACTTCCAACCTCAACCAACTCATCTCCAGGTTCAGCGCTCTCGGACTTTCCACCAAGGACTTGGTTGCTCTAGCAGGCGGTCACACAATTGGACAAGCAAGATGTACTAGCTTCCGAGCGAGACTCTACAACGAGAGCAACATAGAAGCTTCGTTCGCCACAAGCAGGAAAACCAACTGTCCCAGAGCATCGGGTACAGGGGACAACAACCTTGCGCCGCTTGATCTCCAAACACCCACGGCCTTCGACAACAACTACTTCAGGAACCTTGTTCAGAACAAGGGGCTGCTCCACTCCGACCAGCAACTCTTCAACGGTGGCTCCACCGACTCTATAGTCAGAGGCTACGCCTCCAACCCGACCTCATTCTCCTCTGACTTCGTCAGCGCCATGATCAAGATGGGAGACATTAGTCCCCTCACTGGATCCAACGGTGAAATCAGGAAGAACTGCAGGAGGATCAACTAA 954 0.5115 MASRLVLALAIFALVLGNGNAQLSTNFYSSSCPKLFSTVRSTVQSAISKEARMGASLLRLFFHDCFVNGCDGSILLDDTSNFTGEKNANPNRNSARGFEVIDAIKTAVEKVCPGVVSCADILAVAARDSVNILKGPTWNVKLGRRDARTASQSAANNGIPPPTSNLNQLISRFSALGLSTKDLVALAGGHTIGQARCTSFRARLYNESNIEASFATSRKTNCPRASGTGDNNLAPLDLQTPTAFDNNYFRNLVQNKGLLHSDQQLFNGGSTDSIVRGYASNPTSFSSDFVSAMIKMGDISPLTGSNGEIRKNCRRIN* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2380 317 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 ProSiteProfiles Plant heme peroxidase family profile. 22 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PANTHER PEROXIDASE 6 317 - -
Amo20g2380 317 SUPERFAMILY Heme-dependent peroxidases 22 317 IPR010255 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 Gene3D - 26 314 - -
Amo20g2380 317 Pfam Peroxidase 39 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PANTHER PEROXIDASE 72-RELATED 6 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 CDD secretory_peroxidase 22 316 IPR033905 GO:0004601|GO:0042744
Amo20g2380 317 Gene3D Peroxidase, domain 2 160 296 - -
Amo20g2380 317 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601
Amo20g2380 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Amo20g2380 317 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo20g2380 317 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2380 Amo-Chr20 111666568 111668777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2380 21 317 Peroxidase AT5G05340 76.431 1.98e-174 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2380 K00430 - gmx:100803637 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2380 20 111666568 111668777 Amo20g2380 20 111666568 111668777 ECH