Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2379 ATGTCCAGAGAAAGGGAGAGATTTGAGGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATAATGTTTCAAGTCAAATGGGAAGAAGACACATGTTAGGGCCAGCAGGAACCCTAAACACAATTACACCATGTGCAGCATGCAAGCTACTGCGACGAAGATGCGCACAAGAATGCCCCTTCTCTCCATATTTCTCACCTCATGAGCCCCAAAAGTTCGCTTCTGTCCACAAAGTCTTTGGTGCCAGCAACGTCTCCAAGATGCTCATGGAGGTACCGGAGTGCCAAAGAGCTGATGCAGCGAATAGTCTAGTTTATGAGGCTAATGTGAGGCTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCAACATTGCAGCATCAAGTTCAATCTTTACAAGCTGAACTCAATGCAGTGAGGTCAGAAATACTTAAATACAAACTCAGAGAAGCTAATAACAATATCATTATTCCCTCCTCCCACCATCATCTTCCTATGCTCCCTTCATCCGGGGCTGTTTCCGTCACTGCTCCCCCACCCCCGCCTCCTCCTCCGCCGCCACCACCACTTCCTCCTAATTCTCTCCCTCCCATTTCTTCCTCTTCTTCCTCCATGTACATCCAACAACAACAGAGGCCTCCCACCAACTATAGCAGAATTCCAAGTGACAATATTTCTTATTTTGGTTAA 690 0.4638 MSRERERFEEIGKKIKREGDNVSSQMGRRHMLGPAGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISTLQHQVQSLQAELNAVRSEILKYKLREANNNIIIPSSHHHLPMLPSSGAVSVTAPPPPPPPPPPPPLPPNSLPPISSSSSSMYIQQQQRPPTNYSRIPSDNISYFG* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2379 229 ProSiteProfiles LOB domain profile. 42 143 IPR004883 -
Amo20g2379 229 MobiDBLite consensus disorder prediction 167 229 - -
Amo20g2379 229 MobiDBLite consensus disorder prediction 174 196 - -
Amo20g2379 229 MobiDBLite consensus disorder prediction 197 229 - -
Amo20g2379 229 PRINTS Wilm's tumour protein signature 125 141 - -
Amo20g2379 229 PRINTS Wilm's tumour protein signature 174 188 - -
Amo20g2379 229 Coils Coil 122 149 - -
Amo20g2379 229 Pfam Lateral organ boundaries (LOB) domain 43 140 IPR004883 -
Amo20g2379 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 22 229 - -
Amo20g2379 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 22 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2379 Amo-Chr20 111636528 111637876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2379 28 175 AS2 family AT2G40470 82.432 3.31e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo20g2379 LOB 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2379 - - gmx:100790799 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1868 10 66873214 66874545 Amo20g2379 20 111636528 111637876 hybridization