Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2338 ATGAAAGGCCAAAATACTGAATCCCTCTCTAAGCCAGTATCCGACCACCAACTACCTCCGCTATCACCTGCCTCTGCACCCGCGCCCATTGTAGATACCAATAAAACCACCGTGAGGCCTGGTCACCGGCGTAGCAACTCGGCGGATGACGCCTCTTCTTCTTCGTTGTTGTTGGAAGGCATTGAGGCCAAGAAGGCCATGTCCCCTGACAAGCTTGCTGAATTATGGACCGTTGATCCCAAGCGAGCCAAGAGGATTTTGGCCAACCGTAAGTCGGCGGCCCGCTCAAAGGAGAGGAGAGCTTGTTATGTGGTGGAGCTTGAGAGAAAAATTCAGGTTCTTCAAACAGAAGCAACTACTCTTTCAGCCCAATTAAATCTTTTCCAGAGAGATACAACTGCTCTGAATGAAGCACTGAAAAAAGAAGTTGATAGACTCAAGATTGCTACTGGAGAGATGGTAACTCGTCCCAATTCGAATAGTTTGGCAATGCAACGGGCTTCATATTCTCAAGCTCCTTTCTTCTCGCTTCAACTGCAACATTTTGCAAGCGAACTTCACACCATGCAAATGCCTCCTTTGCATCCACTATTGCCTAATATGTCTTCCCCTCGACCGCTGATTGATGTAACTACTCCATACAATTTGTCAAACATGTTGCCAAGTGATCATGTTCCTGTTGGCCAATTTCAGGTGCTAGACATAAGTCATCCGATCCCTCATGTTCTGATTCATGATGGTCCCTCCATTTCTGTTAATAAAATCAACAATGCCTTTTGA 780 0.4628 MKGQNTESLSKPVSDHQLPPLSPASAPAPIVDTNKTTVRPGHRRSNSADDASSSSLLLEGIEAKKAMSPDKLAELWTVDPKRAKRILANRKSAARSKERRACYVVELERKIQVLQTEATTLSAQLNLFQRDTTALNEALKKEVDRLKIATGEMVTRPNSNSLAMQRASYSQAPFFSLQLQHFASELHTMQMPPLHPLLPNMSSPRPLIDVTTPYNLSNMLPSDHVPVGQFQVLDISHPIPHVLIHDGPSISVNKINNAF* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2338 259 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 134 255 - -
Amo20g2338 259 Pfam bZIP transcription factor 81 127 IPR004827 GO:0003700|GO:0006355
Amo20g2338 259 MobiDBLite consensus disorder prediction 1 15 - -
Amo20g2338 259 SUPERFAMILY Leucine zipper domain 81 137 IPR046347 GO:0003700|GO:0006355
Amo20g2338 259 Gene3D - 80 133 - -
Amo20g2338 259 PANTHER BZIP TRANSCRIPTION FACTOR 18 32 135 - -
Amo20g2338 259 PANTHER BZIP TRANSCRIPTION FACTOR 18 134 255 - -
Amo20g2338 259 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 32 135 - -
Amo20g2338 259 SMART brlzneu 77 141 IPR004827 GO:0003700|GO:0006355
Amo20g2338 259 Coils Coil 104 124 - -
Amo20g2338 259 CDD bZIP_plant_RF2 82 131 IPR044759 GO:0003700|GO:0006355
Amo20g2338 259 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 142 IPR004827 GO:0003700|GO:0006355
Amo20g2338 259 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2338 Amo-Chr20 109526094 109529417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2338 39 236 bZIP Transcription Factor Family AT2G40620 44.715 2.64e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo20g2338 bZIP_1 1.4e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2338 - - adu:107470204 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1837 10 65785461 65788839 Amo20g2338 20 109526094 109529417 hybridization