Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2333 ATGCATATAATGGCTCTTCACCATCCACACCGTTTATTACTAGACACAAGCTCAAGCTCTGGTGATGTAAATAGGACAAAAGATTCCTCCTTAGGCGACCCGAATTTTGACACCAACATGGTGATTATCTTGGCTGCTTTGCTGTGTGCACTCATATGTGCTTTGGGACTCAACTCAATAGTGCGTTGCGCTCTAAGATGTAGCCGAAGGTTGGCTTTCGAGACCCCGGACGAAGCAGCAGCGCGATTAGCGGTTAAAGGGTTGAAGAAGAGTGCTCTGCATCAGATTCCTATAGTTGTTTATGGTAATTCAGGTGCTACTAATAGTTGTATTAAAGCCACTGATTGTGCAATTTGCCTAGGGGAGTTTATGAATGGGGAAAAAATTAGAGTGCTACCAAAATGTAACCATGGATTCCATGTTAAGTGTATAGATACATGGCTGCAATCACACTCCTCTTGCCCAACTTGTAGAAGGTGTTTGATTGAGCAACCAGCAACAAGTTCTGAAGTTGCAACTGTGGCTGTTGCTGTGGCTACAGCTTCAGGAACAAGGAATAGTCATGCAGATAATAATGCTTCAGGAGGGTATCAACCTGATCATGTAGCTGTAGTTGTTGATGAGATTAGCTAG 633 0.4344 MHIMALHHPHRLLLDTSSSSGDVNRTKDSSLGDPNFDTNMVIILAALLCALICALGLNSIVRCALRCSRRLAFETPDEAAARLAVKGLKKSALHQIPIVVYGNSGATNSCIKATDCAICLGEFMNGEKIRVLPKCNHGFHVKCIDTWLQSHSSCPTCRRCLIEQPATSSEVATVAVAVATASGTRNSHADNNASGGYQPDHVAVVVDEIS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2333 210 SMART ring_2 116 157 IPR001841 -
Amo20g2333 210 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Amo20g2333 210 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 10 180 - -
Amo20g2333 210 PANTHER RING-H2 FINGER PROTEIN ATL74 10 180 - -
Amo20g2333 210 Pfam Ring finger domain 115 158 IPR001841 -
Amo20g2333 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 162 IPR013083 -
Amo20g2333 210 CDD RING-H2_PA-TM-RING 115 158 - -
Amo20g2333 210 SUPERFAMILY RING/U-box 115 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2333 Amo-Chr20 108804152 108805940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2333 11 166 C3H Transcription Factor Family AT3G10910 56.548 3.55e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2333 - K19040 gmx:100787273 247.284