Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2326 ATGAGTAGTATTGTAATCTGCGGTAGTGAGGGTAATATTGGTTTTTCAGAGAAGAGGGAGAGGCTTATGAATAAGCTTGTGGAGGGGCATAAACATGCCACTGAGCTGAAGCTTCTCCTTCAGAATCAGAATCAGAATCCTCCGGCCACTATTCATCACGGCGGCGGTTCATCAGCTGAGGCGCTATTAATAACCAAGATTCTCAGATCTTTCGCGGAGACTCTCTCCGTTCTAGATTCTCCTTCTTCTTCTGCTTCCTTCTTCCTTAACGAGAATAACAGTGGGTCCCAGCTTGTTATTGCTGCAAACTCCACCAATAATGATCTGAGGTCTGAAGAAGGTTCCAGTGAGAGTAGCAAAAGATTCTCTTCATCAGTCCCTAAGGATCGAAGAGGCACATACAAAAGAAGGAAAACGGAAGAGACATGGAGCAATGTATCTCCCACCACTGAGGATAATCTTGCCTGGAGAAAGTATGGACAGAAGGACATACTCAATTCTAAATTCCCCAGGAGTTATTATAGGTGCACTCGGAAGTATGATCAAGGTTGCAAAGCAACAAAACAAGTTCAAAGGATTCAAGATAATCCAGTTTTGTATCAAATTACGTACATTGGTCGTCATACTTGCAAAGAAACTCTCAAAGCTCCACAAATGACAGCATATCTTTTGAATCCACAAGACCATCATCAAACCCCACCAACAAATGCTATAATCAAACAAGAATATCCCAAACAAGAGGACACTCCGAGTGGTGAAATAATCATTGCAGAAAAATTGGATGCAAACCTTTGGTCTGAGTTGAAGGATATCGAGATAACCAACCCTCCTACTTATGCTAACTTTRGCGCATTTTCTTATMATTTTTGCACCACCGGGTTCCACTTTGATGATCATCATCATGRTGAAAGTCATATGCTATAA 924 0.4145 MSSIVICGSEGNIGFSEKRERLMNKLVEGHKHATELKLLLQNQNQNPPATIHHGGGSSAEALLITKILRSFAETLSVLDSPSSSASFFLNENNSGSQLVIAANSTNNDLRSEEGSSESSKRFSSSVPKDRRGTYKRRKTEETWSNVSPTTEDNLAWRKYGQKDILNSKFPRSYYRCTRKYDQGCKATKQVQRIQDNPVLYQITYIGRHTCKETLKAPQMTAYLLNPQDHHQTPPTNAIIKQEYPKQEDTPSGEIIIAEKLDANLWSELKDIEITNPPTYANFXAFSYXFCTTGFHFDDHHHXESHML* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2326 307 MobiDBLite consensus disorder prediction 108 141 - -
Amo20g2326 307 SUPERFAMILY WRKY DNA-binding domain 148 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g2326 307 Gene3D WRKY domain 136 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g2326 307 SMART WRKY_cls 150 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g2326 307 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 16 274 - -
Amo20g2326 307 ProSiteProfiles WRKY domain profile. 145 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g2326 307 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 274 IPR044810 GO:0003700
Amo20g2326 307 MobiDBLite consensus disorder prediction 113 141 - -
Amo20g2326 307 Pfam WRKY DNA -binding domain 151 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2326 Amo-Chr20 108154897 108157783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2326 18 242 WRKY Transcription Factor Family AT3G56400 42.308 1.10e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo20g2326 WRKY 3.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2326 - - adu:107470163 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1102 17 29456174 29461064 Amo20g2326 20 108154897 108157783 ECH
Amo20g2326 20 108154897 108157783 Amo20g2326 20 108154897 108157783 ECH