Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2319 GCGCAAAAGGAGCATGATTTAGTTTCATTGCATGCCCAATTCCATCATCATCCTGTTTTAGCTACAAAGAACCTAGTTGAAGAAAAATTCCAAGATGGTGGTGGAGATTGTAACAATTCCTTGATGGCTTCAGTTTCTGGCAATTACTGGAAATCACTTGATGCTAATAATGAGGATAAGGAGGTATCTAGTTTACGAGGCATGCACTTGGATATGGACTCATTAAGTCCCAAGAACAACTGTTTAGTATCATTGACTTTGCTCTGGGCATATGCTGGGGTTAGAACAAAGGTCAGTAATGATTTTTGTGTCAAACTCCTTTGCATTCTCCAATTCTACGTAACCTGCAGTAACAGGCTAGCCTGTAGTGAGATCAGAGAATTTGAATATCTTGAAAATCCAACTAAATCTGTGAGCCATGTGGGTAATGAAATCAAACCAGAAGATGAGGTACGGCTTGAAGTGCGACTACTTAAAATTTTAAACTTGGGTCCTCACAGTGTGGGTTGGAAATGCTCTGTTCCCAAATGTGAAAATTGTAAAATTAAAAAAGACAAAAATAAGAATTTCCAGATCGGTGAAAGCAATCACATGAGCTCTAGGGATGTGTTATTTCAGAGATTAGTTAGTGACAAGCTTTTTAAATGGTTGGTCTTTAAGGTTCATGAAGGAGGAAAAGGGCCGAACATGTTGGACGCTGAAGGCCAAGGAGTTATACATTTGGCTGCTGGTCTTGGTTATGTGTGGGCTATGGCCCCTCTAGTTAATGCTGGTATTAATCCTAACTTCAGAGATGCTCATGGAAGAACAGGACTTCACTGGGCATCACATTTTAGGAGGCCAGATTCTATGGGAAACTATTTTCTTGTGCCTATTTATATTAGTAATTTTAGGGATGTTTTCACTTTAATGCAAGAGGAAACTGTAATTGCACTAGTCAAATTAGGTGCAGTCCCAGGTCTTGTTGATGACCCAAAATCAGCCTTTCCTCGAGGGAAAACAGCAGCTGATTTAGATTCAAGTAGAGGATATAAAGGTATTGCTGGATACCTGGCTGAGGCAGATCTTGTAAATCAATTGTCTAGATTAACTGTTAATGAAAATGAGAAGGACAACATTGCCACAAACTTAGCAACTGACAATGCATTTGAATCTGCTGATACTGATTCATCAAAGATGACAATGGATGAGCAGTGCTATCTAAGAGAACAACTAGCCAAGAATAGCAGTGATATTTCTGAAGATGCACTTGACCAAGTTGCTGATTCTTTGAACAAGGTTCAGAAGATGGGTCATTTTGAGGATTATCTGCATTCTGCAGCTTTAAAGATTCAAAAGAGATACCGCGGGTGGAAGGGAAGAAAAGATTTTTCGAGAATATGCAACCGCATTGTAAAAGTTCAGGCTCATGTTAGAGGTCACCAAGTTCGAAAGCAGTACAAAATAGTTGTTTGGTCTGATGGTTTGCTCATTATTTTGGCATACTCGGAACAGACTGGTGATGGTGGTAGCAGTCAACCACAGCCTGTTGAGTAG 1536 0.3978 AQKEHDLVSLHAQFHHHPVLATKNLVEEKFQDGGGDCNNSLMASVSGNYWKSLDANNEDKEVSSLRGMHLDMDSLSPKNNCLVSLTLLWAYAGVRTKVSNDFCVKLLCILQFYVTCSNRLACSEIREFEYLENPTKSVSHVGNEIKPEDEVRLEVRLLKILNLGPHSVGWKCSVPKCENCKIKKDKNKNFQIGESNHMSSRDVLFQRLVSDKLFKWLVFKVHEGGKGPNMLDAEGQGVIHLAAGLGYVWAMAPLVNAGINPNFRDAHGRTGLHWASHFRRPDSMGNYFLVPIYISNFRDVFTLMQEETVIALVKLGAVPGLVDDPKSAFPRGKTAADLDSSRGYKGIAGYLAEADLVNQLSRLTVNENEKDNIATNLATDNAFESADTDSSKMTMDEQCYLREQLAKNSSDISEDALDQVADSLNKVQKMGHFEDYLHSAALKIQKRYRGWKGRKDFSRICNRIVKVQAHVRGHQVRKQYKIVVWSDGLLIILAYSEQTGDGGSSQPQPVE* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2319 511 SMART iq_5 436 458 IPR000048 GO:0005515
Amo20g2319 511 SMART iq_5 459 481 IPR000048 GO:0005515
Amo20g2319 511 ProSiteProfiles IQ motif profile. 437 466 IPR000048 GO:0005515
Amo20g2319 511 Gene3D - 435 483 - -
Amo20g2319 511 ProSiteProfiles IQ motif profile. 462 488 IPR000048 GO:0005515
Amo20g2319 511 SUPERFAMILY Ankyrin repeat 222 354 IPR036770 -
Amo20g2319 511 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 34 493 - -
Amo20g2319 511 Pfam IQ calmodulin-binding motif 464 481 IPR000048 GO:0005515
Amo20g2319 511 Pfam IQ calmodulin-binding motif 438 457 IPR000048 GO:0005515
Amo20g2319 511 Gene3D - 208 359 IPR036770 -
Amo20g2319 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 484 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2319 Amo-Chr20 107797268 107801599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2319 112 495 CAMTA Transcription Factor Family AT5G64220 37.156 1.50e-75 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2319 K21596 - gmx:100818336 548.895