Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2315 ATGGATCCTTCAAGCTCAGATTCTGTGTTGAATCCAGGCGATGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGCCTCTCTCTGTTGTTGATGACGAGCTTGTTCCGAAGGTCGGAATGACCTTTACCACCCTTGAAGATGCCAGAAAATTTTACAGGAACTACGCTAAGGCTGCAGGTTTCTCTACAAGAGTTTGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCAACCGAGAAGACCAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGCAAAGCAGAGATGCTCAAACAACACAGGGAACTAAGCATGTCCATTCGTCGTACGATAGAGAATAACGACGAGGCTGATCTGTACGAAGACCGTCACATATGGGTTCCTATCTATCTGGACCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTACATCATCACTCGGAACAGCTCGCTCATTCAGTTCGTCAAACAGTACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAAATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATCGAAGCTCAGTTTCAAGATGCGTACACCCACGCAAAGTTTAGGGAAGTCCAAGCCCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAAAGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCGACAAGTTCGCGGTTACCTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCCCCTAGATACATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAACCACGACGAGCCACTAATGGAGCCAAGAAGCAAGAGGTTCGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCCTCCGAATCGGAGGAGCTGACTGCAATTCTGCACCGTGCGTACGATAACGTCATGACCGAGATGGAAGCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAACAGGCTAGGTTCAAAGCTGGAGAAACAGATTGCAAATTCCACAAAGAAGAAGAAGACGAAAGTTTTAAGCGAGATAAACCTGTTTGATGCTGCATCAGTGGCGCATTCAAGTTGCAGCCAATATCAGGGACAAGTTATAAATTATCAGTTCAGGGTACCAGCAGCAGGGGATAACTCTTTGGGTGTATAG 1545 0.4544 MDPSSSDSVLNPGDVDYEFESNEVPEPLSVVDDELVPKVGMTFTTLEDARKFYRNYAKAAGFSTRVWCTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNDEADLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKYIITRNSSLIQFVKQYDNCLGSREQAERESNAADFHTVIPCATKSSIEAQFQDAYTHAKFREVQAQFRGKANCITRLKNSALGYSVYEVGEQVSSSIFDKFAVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSNHDEPLMEPRSKRFDQLVFRSQNICEFASESEELTAILHRAYDNVMTEMEALKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLEKQIANSTKKKKTKVLSEINLFDAASVAHSSCSQYQGQVINYQFRVPAAGDNSLGV* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2315 514 Pfam SWIM zinc finger 310 334 IPR007527 GO:0008270
Amo20g2315 514 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 148 IPR031052 GO:0006355
Amo20g2315 514 MobiDBLite consensus disorder prediction 419 455 - -
Amo20g2315 514 PANTHER OS03G0843700 PROTEIN 26 148 - -
Amo20g2315 514 SMART 26again6 312 339 IPR006564 GO:0008270
Amo20g2315 514 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
Amo20g2315 514 MobiDBLite consensus disorder prediction 427 441 - -
Amo20g2315 514 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 164 410 IPR031052 GO:0006355
Amo20g2315 514 ProSiteProfiles Zinc finger SWIM-type profile. 301 337 IPR007527 GO:0008270
Amo20g2315 514 PANTHER OS03G0843700 PROTEIN 164 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2315 Amo-Chr20 107675286 107678262 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g2315 FAR1 5.2e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2315 - - adu:110280503 642.884