Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2298 ATGTACCGCGCAAGCACACTTACATCAAGAGCAACTATGTCGTATCGATCGGATGAAAGCCATAACTTATTCAGAGGATTGTGTTCATATTTCTTTAATGTTGCCCAAAATTTCGTGACCTGTAACGAAGAAGCGGCCATGTTGCATTCGGCTCTTGATGATGTCAGAGCCAAGTCAGTTGATTATCATGCCAACTTGGGATCCAAAAGTGTTGTTGGTACACAGAACAACATGGCCACACAGTATGAGTGCGTGGTTAGTCCAGACGACATTCAAGGTCTTTCAAAAGTGGCAACTAAGGGTTGGTCGATATCGAAGAGTTATTTGATACCCTTTTTTATCATACTCTTAATCTGCAGTGAAGAAGGTCCTGTTGTGGCAGCTGAGCCAGCAGCTCCTGCCATTGGCGAGCCAATGGATATCATGACTGCCTTACAGCTAACACTTAGGAAGTCACTTGCTTATGGTGGTCTTGCACGAGGCCTTCATGAGGGTGCCAAGGTGATCGAGAAGCGCACTGCTCAGCTCGTTGTTCTTGCTGAGGATTGTGACCAACCTGACTATGTTAAACTCGTCAAGGCCCTTTGTGCTGAGCACAATGTTAGTTTGCTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGGTTGTGCAAGATTGATTCGGAAGGAAAAGCTAGGAAGGTAACTGGTTGCTCCTGCGTAGTTGTGAAGGATTTTGGAGAAGAACATGAAGCCTATAATGTTGTCCTTCAGCACGTTAAAGCTCAATGA 777 0.4556 MYRASTLTSRATMSYRSDESHNLFRGLCSYFFNVAQNFVTCNEEAAMLHSALDDVRAKSVDYHANLGSKSVVGTQNNMATQYECVVSPDDIQGLSKVATKGWSISKSYLIPFFIILLICSEEGPVVAAEPAAPAIGEPMDIMTALQLTLRKSLAYGGLARGLHEGAKVIEKRTAQLVVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2298 258 Gene3D - 126 258 IPR029064 -
Amo20g2298 258 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 144 237 IPR004038 -
Amo20g2298 258 PANTHER 40S RIBOSOMAL PROTEIN S12 120 258 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo20g2298 258 PRINTS Ribosomal protein S12E family signature 148 161 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo20g2298 258 PRINTS Ribosomal protein S12E family signature 228 241 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo20g2298 258 PRINTS Ribosomal protein S12E family signature 203 224 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo20g2298 258 PRINTS Ribosomal protein S12E family signature 162 178 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo20g2298 258 SUPERFAMILY L30e-like 138 256 IPR029064 -
Amo20g2298 258 PANTHER 40S RIBOSOMAL PROTEIN S12 120 258 - -
Amo20g2298 258 ProSitePatterns Ribosomal protein S12e signature. 144 162 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2298 Amo-Chr20 106978024 106980849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2298 135 258 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 77.419 2.33e-66 201