Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2292 ATGGTGGGTTCGATTGTGCATGGAATGGCTCTTCCTGTTGGATACCTCTTGTTAGGAAAAGCTCTTAATGCTTTTGGGAACAATATTCATGACCAAGATGCCATGGTTAAAGCTCTTAAACAGGTTGTTCCGTACGTGTGGTACATGGCCATCGCCACATTCCCTGCTGGGATACTTGAGATTGGATGTTGGATGTATACAAGCGAAAGGCAGTTATCACGCCTAAGAATAGCATATCTAAAAGCAGTTCTTAGCCAAGAGATAGGAGCATTTGATACAGAACTAACAAGTGGAAAAGTCATTAGTGGAATAAGCAAACACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTTACCTCAAGCTGTTCAACATTCTTTTCCGGAATTGTGATTGCTGCCATATGCTGTTGGGAAGTGTCACTCTTGTGTTTAGTGGTTGTACCCCTTATTCTTATGATTGGAGCAACTTACACCAAGAAAATGAACACCATTTCAACGACCAAAATGTTTTTCCATTCTGAAGCTACAGCTATGATAGAGCAGACAATATCACACATAAAAACAGTATATGCTTTTGTGGGAGAGAGTTCTGCAATCAAATCCTTCAGAGAGAATATGGAGAAACAGTTCCAAATAAGCAAAGGGGAGGCGCTTGTGAAGGGAGTTGGAACAGGGATGTTTCAAACCGTAAGTTTCTGTTCCTGGGCTCTCATTGTATGGGTTGGAGCCGTTGTCGTGACAGCCGGTAGAGCGAAGGGAGGAAACATTATAGCTGCAGTGATGAGCATCCTCTTTGGTGCCATATCCATCACTTACGCGGCACCAGACATGCAAATATTCAACCAGGCAAAAGCAGCAGGATATGAAGTTTTCCAAGTGATACAAAGAAAGCCTTTAATAAGCAACGAAGCACAAGGGAGGAAGGTTACCGAGATCACAGGCGACATTGAGCTGAGGGATGTATACTTTACCTACCCATCTCGACCGGAGAAACCTATCCTTCAAGGACTATCCTTGTCAATTCCAGCAGGAAGGACAGTAGCTCTAGTTGGTAGCAGTGGTTGCGGAAAAAGCACTGTTATTTCCCTGGTTAACAGATTCTATGACCCTGCTAGAGGAGAAGTTTTTATTGATGGTCACAATATCAAGGATCTTGATCTGAAGTTCCTTCGGAGTAATATAGGGCTCGTTTCCCAAGAACCGTCACTGTTTGCAGGCACCATCAAGGATAACTTGAAAGTGGGGAAAATGGATGCAGATGATCAAGAGATACAGAAGGCAGCTGAAATGTCAAATGCACACACTTTTGTATCACAGCTGCCGAATCAGTACTTAACAGAGGTAGGACAAAGGGGAGTTCAATTATCAGGAGGCCAGAAACAGAGAATTGCAATAGCAAGAGCCATTCTTAAGAATCCTCCCATCCTTTTGCTTGATGAGGCAACTAGCGCCCTTGACACCGAGTCAGAAAAGCTGGTTCAAGAAGCACTTGAAACAGCCATGCAGGGAAGGACTGTCATCTTGATTGCACACAGACTCTCAACAGTTGTAAACGCAGATATGATTGCTGTAGTAGAGAACGGACAAGTTGTAGAAACAGGCACACACCAGAATTTGCTCGACAAAAGCGATTTCTATAGGGCATTATATAGCATGCAGAACCTTGAAGCAGCTCCTGAATCCAGCACCACAATTTCCAAAAGTAAGAGTACCCACCAAGGAGATTCTACTGATGAAGCTAAACTCTCGGAGAAGCAAAAAGAGACTCAAATAAATCCCATGGAGGATTCTGAGCTAAAGGGACAAGAGACAAGAAAAAGAAATATATTTTTCAGAATCTGGTTTGGTCTGAAACCGAGGGAGCTGGCAAAGATTGCTTTTGGCTCAGCCGCAGCAGCTTTCTCTGGTGTGTCGAAGCCAGTTTTCGGGTACTGCATCATCACTATTGGAGTTGCATACTTCGATCCCGATGCAAAAAGGAAGGTTGGCTATTATTCAGCCTTCTTCTCTGCAATAGGGCTGCTTTCATTACTCAGTAACACAATCCAGCATTACTTCTATGGAGTAGTCGGAGAAAAGGCCATGGAGAATTTCAGACATGCTCTATATAAAGGTGTGCTCCGTAACGAAGTAGGCTGGTTTGATAGATCTGATAACACGGTTGGTTCATTAACTTCGCGAATCATCAGTGACACTGCCCTGGTCAAAATCATAATTGCTGATCGGATGGCTGTGATTGTGCAATGCATTTCCTCCATATTGATAGCAACAGGTGTGAGCATGTATGTCGACTGGAGAATGGCTTTGGTAGCTTGGGCTGTGATGCCTTGCCACTTCATAGGCGGTCTCATTCAAGCAAAGTCTGCCAAAGGCTTTTCAGGTGACTATGCTGCTTCCCATTCTGAGCTTGTTGCTCTTGCATCTGAGTCTGCAGCCAACATAAGGACTATAGCGTCATTTTGCCATGAAGAACATGTAATCATGAAAGCAAAGACATCTCAGGAAATTCCAATGAGAAAGTACAGGAATGAAAGCATCAAATACGGGATCGTTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTCTGTGGTATACAACAATTCTAGTTGAAAGACGTCAAGCCACCTTTAAAAATGGAATACGAGCATACCAAATCTTTTCTCTCACTGTTCCCTCTATCACAGAATTATATACACTGATCCCAACTGTCATCTCAGCTATCAATGTACTAACCCCAGCATTCCAAACGCTTGATCGGAAAACTGAAATCGAACCAGATACACAGGATGATTCCCAACCGGAGAGGATCCTAGGAGAAGTTGAATTTGAACATGTAAAATTCAACTACCCTTCAAGACCTGCAGTCACTGTTCTGGACAACTTCAGTTTACAAATTGAAGCTGGATCAAAGGTGGCTTTTGTAGGACCGAGTGGTGCGGGAAAATCCTCTGTTTTGGCCCTTATACTAAGATTTTATGATCCAAGGGCAGGAAAGGTATCAATTGATGGGAGAGATATACGGGGATATAATCTAAGATGGCTAAGGACTCAAATAGGGCTAGTACAACAAGAACCACTTCTTTTTAACTGCTCTATAAGAGACAACATTTGCTATGGACACAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCCAGAGAAGCAAACATACATGAATTTGTAAGTAACCTACCAGATGGATATAACACTGTTGTTGGGGAAAAAGGGTGCCAGCTTTCAGGAGGTCAAAAGCAAAGAATAGCCATTGCCAGAACCTTGCTAAAGAAGCCTGCAATTTTACTCCTAGATGAAGCAACAAGTGCTCTTGATGCTGAGTCGGAAAGAACTATTGTGAGCGCTTTAAAAGCAATAAATCTCAAGGAGGACAGTGGCTTGTGTTCAAGGACTACCCAGATTACGGTAGCTCACAGGCTTTCCACAGTAATAAATTCGGATACCATAATTGTCATGGACAAGGGTAAGATTGTAGAGATGGGATCCCACTCAACCCTAATAACAACTGGAGAAGGACTCTATTCGAGGTTATTCAAGCTACAGAGCTTTGATGAATCCTCGTAA 3606 0.4309 MVGSIVHGMALPVGYLLLGKALNAFGNNIHDQDAMVKALKQVVPYVWYMAIATFPAGILEIGCWMYTSERQLSRLRIAYLKAVLSQEIGAFDTELTSGKVISGISKHMSVIQDAIGEKLGHFTSSCSTFFSGIVIAAICCWEVSLLCLVVVPLILMIGATYTKKMNTISTTKMFFHSEATAMIEQTISHIKTVYAFVGESSAIKSFRENMEKQFQISKGEALVKGVGTGMFQTVSFCSWALIVWVGAVVVTAGRAKGGNIIAAVMSILFGAISITYAAPDMQIFNQAKAAGYEVFQVIQRKPLISNEAQGRKVTEITGDIELRDVYFTYPSRPEKPILQGLSLSIPAGRTVALVGSSGCGKSTVISLVNRFYDPARGEVFIDGHNIKDLDLKFLRSNIGLVSQEPSLFAGTIKDNLKVGKMDADDQEIQKAAEMSNAHTFVSQLPNQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMQGRTVILIAHRLSTVVNADMIAVVENGQVVETGTHQNLLDKSDFYRALYSMQNLEAAPESSTTISKSKSTHQGDSTDEAKLSEKQKETQINPMEDSELKGQETRKRNIFFRIWFGLKPRELAKIAFGSAAAAFSGVSKPVFGYCIITIGVAYFDPDAKRKVGYYSAFFSAIGLLSLLSNTIQHYFYGVVGEKAMENFRHALYKGVLRNEVGWFDRSDNTVGSLTSRIISDTALVKIIIADRMAVIVQCISSILIATGVSMYVDWRMALVAWAVMPCHFIGGLIQAKSAKGFSGDYAASHSELVALASESAANIRTIASFCHEEHVIMKAKTSQEIPMRKYRNESIKYGIVQGFSLCLWNIAHAVALWYTTILVERRQATFKNGIRAYQIFSLTVPSITELYTLIPTVISAINVLTPAFQTLDRKTEIEPDTQDDSQPERILGEVEFEHVKFNYPSRPAVTVLDNFSLQIEAGSKVAFVGPSGAGKSSVLALILRFYDPRAGKVSIDGRDIRGYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGHNGASESEIVEVAREANIHEFVSNLPDGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVSALKAINLKEDSGLCSRTTQITVAHRLSTVINSDTIIVMDKGKIVEMGSHSTLITTGEGLYSRLFKLQSFDESS* 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2292 1201 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 1196 IPR039421 -
Amo20g2292 1201 Pfam ABC transporter transmembrane region 634 888 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g2292 1201 Pfam ABC transporter transmembrane region 2 271 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g2292 1201 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 286 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g2292 1201 ProSitePatterns ABC transporters family signature. 459 473 IPR017871 GO:0005524
Amo20g2292 1201 SMART AAA_5 976 1170 IPR003593 -
Amo20g2292 1201 SMART AAA_5 347 539 IPR003593 -
Amo20g2292 1201 PANTHER OS08G0153200 PROTEIN 2 1196 - -
Amo20g2292 1201 CDD ABC_MTABC3_MDL1_MDL2 320 557 - -
Amo20g2292 1201 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 630 914 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g2292 1201 SUPERFAMILY ABC transporter transmembrane region 2 302 IPR036640 GO:0005524|GO:0016021
Amo20g2292 1201 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 320 556 IPR003439 GO:0005524
Amo20g2292 1201 ProSitePatterns ABC transporters family signature. 1088 1102 IPR017871 GO:0005524
Amo20g2292 1201 CDD ABC_6TM_Pgp_ABCB1_D1_like 2 294 - -
Amo20g2292 1201 Gene3D - 310 558 IPR027417 -
Amo20g2292 1201 Pfam ABC transporter 338 487 IPR003439 GO:0005524
Amo20g2292 1201 SUPERFAMILY ABC transporter transmembrane region 617 934 IPR036640 GO:0005524|GO:0016021
Amo20g2292 1201 CDD ABC_MTABC3_MDL1_MDL2 949 1195 - -
Amo20g2292 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 942 1195 IPR027417 -
Amo20g2292 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 557 IPR027417 -
Amo20g2292 1201 Pfam ABC transporter 967 1116 IPR003439 GO:0005524
Amo20g2292 1201 MobiDBLite consensus disorder prediction 576 604 - -
Amo20g2292 1201 CDD ABC_6TM_Pgp_ABCB1_D2_like 644 932 - -
Amo20g2292 1201 MobiDBLite consensus disorder prediction 564 604 - -
Amo20g2292 1201 Gene3D - 939 1200 IPR027417 -
Amo20g2292 1201 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 949 1193 IPR003439 GO:0005524
Amo20g2292 1201 Gene3D ABC transporter type 1, transmembrane domain 2 911 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2292 Amo-Chr20 106788720 106798515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2292 2 1197 Calmodulin-binding Proteins AT2G36910 41.234 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2292 K05658 - zju:107414909 1769.59