Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2289 ATGGAAACTCTGAAGGCTGCGATTCCCGAAGGCCTGAAGCGCATGATCGGTGATAGCACCGTCGATGATCTTCGCGCCACCTCTTCCTCCCTCCACAGCTTCTTCCATCACTTCGAGCCCTTCCACCAGTTACTCACTGAACTCGTGGATCCCAAGCATGCTCTCTGCGGCAAGAGCAAAGACGCTGCGCTCGAATCCAAGCAGCTCGGAAACCAGTGCTTCTCCAAAGGAAATTACGCCAACGCTCTTGATTTCTATACTCAGGCATTGCGAAAGGCACCTTTTGAGGATGGTGATATGGAAAATAATCTGGTTGCAACTTTGTATATCAATCGAGCTACTGTATTGCATAAAATGAGTCTTTTGACAGAGTGTTTGCGAGATTGTACTCGTGCCCTTCAGATATGTCCAAGCAATGCAAAGGCATGGTACAGAAGAGGTAAGGCAAATGCTTCCCTGGGAAATTATAAAGATGCGATGTGTGACCTAAATATGGCTAAAACTGTGGAATCATCATTGAATGGGAAGAGACAAATAGAAAGTGAGCAGAAAAATATTTTTGACCAATGCAAGAGCACAAGCACAGTAAGACAACGTAAGGAGAACACCTTGACTACAGTGGGTGAGGTTCCCCAAGTAATGCTACAGTGTGTCGCCATACCTGAGAAAGGAAGAGGCATGGTATCATCAAATGACATTTCACCTGGTTCTTTGGCTCATAGTGAAGAACCTTATGCTGTGATAATATTAAAGCAATGCCGGGAAAGTCATTGCCACTATTGCTTGAATGACCTACCTGCTGATAGGGTACCCTGTAGATCATGTTCCGTACCACTGTATTGCTCCCAGCAATGCCAGACACAGGCTGGTGGGCAAGTCTTAAGGATTTTCCCAGAAGTTCACAGCATTATTGAGAAGTTACCCAGTGACCTTGGAGAGTATGCTGACAAAGTTATTCAAGGTCATGATTCCAAATGTGAAACTGAGAATATCACTGAACATAAGCATGAATGTCATGGTGTAAATTGGTCTGCAGTACTGCCATCAGAGGTGGTTTTAACTGGCCGAATACTGGCAAGGTTTTTACTAGAGAGGACATCAGAAAATATTACGTACTTTGTGGAGAAGCTGGAGCTTTCCCATTGTTATGAACATATGCTGCCTGAAAGCAAATTGGATACACATATATATTCCATTGTGTTATTATATTGTCTTAACCGCTCTTGTGGAGCTGCATTGTCCATTGACGAAGTCACCATTTCCCAGGTTGTTATAATTATTTCTCAAATGAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAAAAGATGCTTGCGGACTATCCAATCAGTTTGGAGATTTTCCATCCTGTCCATACTTAACTAGTAACGTGGAACAGGTCAGGGTGGGTAAAGCTATTTATAAAGCTGGAAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTATTTCACGTAATTTGTGTATACGGACAACAAAAGCTATACCTGCTGAGGGTCATCTGGAGTTGTCTTATGGTCCACAGGTTGGGTTCTGGGATTGTAAAGATCGCCTTAATTTCCTCAAAGAGGAGTACATGTTTCAGTGCCAGTGTACTGGTTGTTCTGAAGTCAATCTATCCGACATTGTCCTCAATGCATTTTGTTGTGTCAATTCTAATTGTTTTGGTGCAGTCTTGGATAGCAGAGTAGTTAACTGTGAAAAGCAGAAAATCAAGAATTTCATGAGCCATTTAAAGATAGACAAGAATGATGACATTCATAAAGTGCTCAACCAAAATGATGCCTCCCATCATATTCAACCTGGATACTGTCTGAAGTGTGGTTCTTACCGTGATTTGGTGCCTTCACGTGCTGCAGTTGATAAAGCTTTAATATTCATAAAAAGGTTACAGGATGCAATATTATCAAAAGAAATTTTAAATACCACGATTGCAGATGCTTTGAGATCCTTACGTTTGCTAAGATCAAATTTGCATGCCTATAACAGGCTTATTGCAGAGGCAGAGGATAACCTTGCACAGGCCTTTTGTTTGTTGGGAGAATTTCAATTATGTATGGACCATTGTAAAGCATCCATCAAGATTCTAGAGAAGTTGTATCATCCTGATGATATAGTAATTGCGTATGAACTTGTGAAGCTTTGTTCGATCCAACTTTCCGTAGGAGATGGTTCTGCAATGGATAGCATAAACCGGATTGGTGATATCTTCTCATGTTATTATGGACTTCATGCTGACTTGGTTTTCCCGTATCTTCAATACCTTAGGAGATAA 2307 0.4118 METLKAAIPEGLKRMIGDSTVDDLRATSSSLHSFFHHFEPFHQLLTELVDPKHALCGKSKDAALESKQLGNQCFSKGNYANALDFYTQALRKAPFEDGDMENNLVATLYINRATVLHKMSLLTECLRDCTRALQICPSNAKAWYRRGKANASLGNYKDAMCDLNMAKTVESSLNGKRQIESEQKNIFDQCKSTSTVRQRKENTLTTVGEVPQVMLQCVAIPEKGRGMVSSNDISPGSLAHSEEPYAVIILKQCRESHCHYCLNDLPADRVPCRSCSVPLYCSQQCQTQAGGQVLRIFPEVHSIIEKLPSDLGEYADKVIQGHDSKCETENITEHKHECHGVNWSAVLPSEVVLTGRILARFLLERTSENITYFVEKLELSHCYEHMLPESKLDTHIYSIVLLYCLNRSCGAALSIDEVTISQVVIIISQMKVNCMTVVRLKSKDACGLSNQFGDFPSCPYLTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFISRNLCIRTTKAIPAEGHLELSYGPQVGFWDCKDRLNFLKEEYMFQCQCTGCSEVNLSDIVLNAFCCVNSNCFGAVLDSRVVNCEKQKIKNFMSHLKIDKNDDIHKVLNQNDASHHIQPGYCLKCGSYRDLVPSRAAVDKALIFIKRLQDAILSKEILNTTIADALRSLRLLRSNLHAYNRLIAEAEDNLAQAFCLLGEFQLCMDHCKASIKILEKLYHPDDIVIAYELVKLCSIQLSVGDGSAMDSINRIGDIFSCYYGLHADLVFPYLQYLRR* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2289 768 SMART tpr_5 63 96 IPR019734 GO:0005515
Amo20g2289 768 SMART tpr_5 106 139 IPR019734 GO:0005515
Amo20g2289 768 SMART tpr_5 140 173 IPR019734 GO:0005515
Amo20g2289 768 SMART tpr_5 677 710 IPR019734 GO:0005515
Amo20g2289 768 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 767 - -
Amo20g2289 768 Gene3D Tetratricopeptide repeat domain 38 203 IPR011990 GO:0005515
Amo20g2289 768 Gene3D SET domain 414 516 IPR046341 -
Amo20g2289 768 Gene3D Tetratricopeptide repeat domain 525 767 IPR011990 GO:0005515
Amo20g2289 768 SUPERFAMILY TPR-like 63 707 IPR011990 GO:0005515
Amo20g2289 768 SUPERFAMILY SET domain 202 547 IPR046341 -
Amo20g2289 768 Coils Coil 662 682 - -
Amo20g2289 768 Pfam SET domain 224 517 IPR001214 GO:0005515
Amo20g2289 768 ProSiteProfiles SET domain profile. 213 517 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2289 Amo-Chr20 106662862 106669487 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo20g2289 SET 6.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2289 K24634 - gmx:100783548 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2289 20 106662862 106669487 Amo20g2289 20 106662862 106669487 ECH
Amo10g1778 10 63222239 63230785 Amo20g2289 20 106662862 106669487 hybridization