Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2276 ATGGAAGCTCTTTTGTGCAGAAAACTTGGTGATCCATCGTTATCTTTGGAAGACGATAACAGCCCAATAATTGTGTCCAAGAACCATCCAGTTCCTCAGTTGAAGTCTCCCACTTCTGTAAGAGTCAGAATCAAGGCTACGAGCTTGAATTTTGCAAATTACTTGCAGATCCAAGGTAAGTATCAGGAGAAGGCGACTTTGCCATTCATACCTGGATCCGATTACTCGGGAATCGTTGACGCCGTTGGCCCCAAAGTTTCAAACTTTCGTGTTGGGGACCCTGTTTGTTCCTTTGCTGCTCTTGGTTCATTCGCTGAGTTCATTGTTGTTGACGAGAACGAGTTGTTTCGTGTGCCAGAAGGTTGTGATCTTGTTGCTGCTGGAGCACTTGCTGTGGCATTTGGCACTTCTCATGTAGCACTTGTCCATAGAGCTAATTTAACCTCTGGTCAGGTGTTGGTGGTTTTGGGTGCAGCAGGAGGTGTAGGGCTTGCAGCTGTTCAAATTGGAAAAGCGTGTGGTGCCATTGTCATTGCTGTTGCTAGGGGAGCTGAAAAGGTGCAGATTTTGAAGACTCTTGGTGTTGATCATGTGGTGGACTTGGTCAGTGAAAATGTTATCGAGAGTGTGAAAGAGTTCCTTAAGGCTAGAAGGCTTAAAGGTGTTGATGTCCTCTATGACCCGGTTGGAGGCAAGCTTACGAAAGAAAGCATGAAACTTCTGAAATGGGGAGCTCAGATTCTCATAATTGGGTTTGCAAGCGGCGAAATTCCTGTCATCCCTGCTAACATAGCTCTTGTTAAGAATTGGACAGTTCATGGTCTTTATTGGGGTAGCTACAAGATACATCGCCCAGCTGTTCTTGAAGATTCTTTAAAAGAGTTATTGTCTTGGTTGGCAAGAGGCCTGATTTCCATCCACATTTCTCATTCTTACTGCTTGTCAGAGGCCAACCTTGCGTTTTCTGCTATCAAAGATAGGAAAGTCATTGGGAAGGTGATGATTGTTTTTGATGACAAACTTACAAGATCTAAGCTGTGA 1041 0.4448 MEALLCRKLGDPSLSLEDDNSPIIVSKNHPVPQLKSPTSVRVRIKATSLNFANYLQIQGKYQEKATLPFIPGSDYSGIVDAVGPKVSNFRVGDPVCSFAALGSFAEFIVVDENELFRVPEGCDLVAAGALAVAFGTSHVALVHRANLTSGQVLVVLGAAGGVGLAAVQIGKACGAIVIAVARGAEKVQILKTLGVDHVVDLVSENVIESVKEFLKARRLKGVDVLYDPVGGKLTKESMKLLKWGAQILIIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPAVLEDSLKELLSWLARGLISIHISHSYCLSEANLAFSAIKDRKVIGKVMIVFDDKLTRSKL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2276 346 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Amo20g2276 346 Gene3D - 30 331 - -
Amo20g2276 346 SUPERFAMILY GroES-like 20 154 IPR011032 -
Amo20g2276 346 CDD QOR1 1 335 - -
Amo20g2276 346 Pfam Zinc-binding dehydrogenase 161 300 IPR013149 -
Amo20g2276 346 PANTHER QUINONE OXIDOREDUCTASE-LIKE PROTEIN 2 1 336 - -
Amo20g2276 346 Gene3D - 133 280 - -
Amo20g2276 346 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 336 - -
Amo20g2276 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 288 IPR036291 -
Amo20g2276 346 SMART PKS_ER_names_mod 10 335 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2276 Amo-Chr20 106216287 106218703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2276 65 266 Monolignol Biosynthesis Gene Families AT1G72680 28.033 6.55e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2276 K00344 - gmx:100817700 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2276 20 106216287 106218703 Amo20g2276 20 106216287 106218703 ECH