Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2268 ATGTGCTCAAACCCCGATGTTTCTTCTCCTGCACCTGCACCTGCACCTGCACCTGGAGATGGACCTTCAACAACTCATTTGCGCCCTAGGTCTCAGCTTCAATCTGGTTCTGGTTCTGGTTCTGGTGGTGCCTGCAGTGGGACTGGTGAAGTTCAAATTCGCATAATTGGTACTGGGGACCAAGACAACAATGATGTGATTGGTTCGGTTTCCTCTTCTTCGCAGCTGAGTCGTGTGTCTCGATCGGGCCATCATGAGTGTATTATGGTCAACGGACGGCCGTGGCCGCCGCCGAACATTACCGACCCTGAGACTCGGCACCGGCTGATTCAGGACCCGCCTGTGTACGAGACACCTGCGTCTGAGGTGTATGAGCTTCTTGGTAGTGGTAATAGGAATGTTCAGCAGGCTGTTAAGTGGCTGGAACAGCTTATCCCTTTCTCCCTCTTGCTGTTGGTGGTGTTCATTCGCCAGCATTTGCAAGCTGAACCCAAGTTTCATTGCGTGCGAATTAGAGAAATAGTATGTGCTACACGCTCTGGTTTCTTTCTCACAATTTATGTATCAGCTGTGCTGCTTAAATCAAATGAGGTGGTTAAGGAACAGACAGCTCTAAAGGGAGATCGGAAAGTCTCTGTTCTTGTTGGTATCTCAGTTGCCTTCATGCTCCACGTGATAGCCGTTTACTGGTTTCAAAATGATGATCTTTTATACCCAATTGCAATGCTTCCTCCAAAAGAAACACCGCTTTTCTGGCATGCAATATTCACCGTTTTGATCAATGATACATTGGTGCGGCAAGCAGCAATGGCTTTCAAGCTTTTGGTGCTAATTTTCTACAAATGTCGCAGAGGCCCCAGCTTCCGTCGGCAGGGTCAAATCTTAACTGCGGTTGAGTACGTGTTGCTGTTGTATCGTGCCTTGCTGCCAACACCAGTTTGGTATCGGTTTTTCTTGAACCATGATTATGGAAGTCTCTTTTCATCACTGACCACAGGGTTGTATCTAACATTCAAACTAACGACTTTAGTTGAGAAGATCCAAAACTTCTTTTCTGCCTTAAGACTATTATCGGGAAGGAAAGTCCAATATGGGGTTTATGCTACAAAGGAACAGGTAAAGTCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCGAGCTCCGCTCTTGTTGCACTGTAAACACTTGTTCTGTGAGGAATGTGTGTCCGAATGGCTTGAGCGAGAAAGGACTTGCCCATTATGCAGAGCAAATGTAAAATCTGCTGATCTGCTCACCTATGGAGATGGTTCGACAAGTATTTTGTGTCAGTTGTTTTAA 1326 0.4653 MCSNPDVSSPAPAPAPAPGDGPSTTHLRPRSQLQSGSGSGSGGACSGTGEVQIRIIGTGDQDNNDVIGSVSSSSQLSRVSRSGHHECIMVNGRPWPPPNITDPETRHRLIQDPPVYETPASEVYELLGSGNRNVQQAVKWLEQLIPFSLLLLVVFIRQHLQAEPKFHCVRIREIVCATRSGFFLTIYVSAVLLKSNEVVKEQTALKGDRKVSVLVGISVAFMLHVIAVYWFQNDDLLYPIAMLPPKETPLFWHAIFTVLINDTLVRQAAMAFKLLVLIFYKCRRGPSFRRQGQILTAVEYVLLLYRALLPTPVWYRFFLNHDYGSLFSSLTTGLYLTFKLTTLVEKIQNFFSALRLLSGRKVQYGVYATKEQVKSAGDMCAICQEKMRAPLLLHCKHLFCEECVSEWLERERTCPLCRANVKSADLLTYGDGSTSILCQLF* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2268 441 ProSitePatterns Zinc finger RING-type signature. 395 404 IPR017907 -
Amo20g2268 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 427 IPR013083 -
Amo20g2268 441 MobiDBLite consensus disorder prediction 57 76 - -
Amo20g2268 441 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 33 441 IPR044235 GO:0061630|GO:1904294
Amo20g2268 441 MobiDBLite consensus disorder prediction 1 48 - -
Amo20g2268 441 SUPERFAMILY RING/U-box 373 423 - -
Amo20g2268 441 MobiDBLite consensus disorder prediction 25 46 - -
Amo20g2268 441 Pfam Zinc finger, C3HC4 type (RING finger) 378 423 - -
Amo20g2268 441 SMART ring_2 380 417 IPR001841 -
Amo20g2268 441 CDD RING-HC_RNFT1_like 379 418 - -
Amo20g2268 441 ProSiteProfiles Zinc finger RING-type profile. 380 418 IPR001841 -
Amo20g2268 441 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 33 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2268 Amo-Chr20 105443056 105446156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2268 48 441 C3H Transcription Factor Family AT5G01960 54.798 3.18e-155 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2268 - K22379 gmx:100784614 466.463