Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2263 ATGCTGCTTATCTCTTTCATCATTCAAAACCCCTTTTCTCTTCAAAGAACCCAGAAGGCCAGAACCCTAAAAGCTTCGAAGAACCCCAGTCCTCACCCCAGCACTCCGTCGTCACTCTCTCTTTTGGCACTCCCACCATCGCTGCTCCTTCGGCGGTGGTTCTCTCTGGTGGTGACTCCCTCGTCGCACACCGTCCGTCGCAAGCTTTCCGTCGCAAGTCTCTCTGGTGGTGACTTCCTCCGAGTTCACTCGGTCGACTCGGAGCAGCCTCTGGACCCTGAATCCATCTTCTCCGAGAACGATGAAGATTCGAGCCCTAAATTCAGGGAGCGAAGAGGGGTTCTCCACTTGTTCCGGAGCTCCTCTCATTCCTCAATCCCAAGCCCTAGCTCTGGCTCTTCTCTTGTCTTCATTCTCACCGTTCCCAATCACCTCTCCTTCGATGACCTCATTCGCTGGTGCGGGCCCCACCTCCACCATCTCCACCGCCTCCTCTTCATCAGGGTAGGTATAGGTGAAATAAAGAAGATGGCTTTTCCAGGAGCAAATGAATCCATGTCAGGAGCAAGTTCACCACAGAGAAAGATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACTACAAATCGCCAAGTAACCTTTTGCAAGCACAGAAATGGTCTTCTCAAGAAAGCATATGAGTTATCTGTGCTTTGTGATGCTGAGGTTGCTCTTATAGTTTTCTCCAGCCGTGGTCGCCTTTATGAATATGCCAATAACAGGTAG 771 0.5071 MLLISFIIQNPFSLQRTQKARTLKASKNPSPHPSTPSSLSLLALPPSLLLRRWFSLVVTPSSHTVRRKLSVASLSGGDFLRVHSVDSEQPLDPESIFSENDEDSSPKFRERRGVLHLFRSSSHSSIPSPSSGSSLVFILTVPNHLSFDDLIRWCGPHLHHLHRLLFIRVGIGEIKKMAFPGANESMSGASSPQRKMGRGKIEIKRIENTTNRQVTFCKHRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNR* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2263 256 Gene3D - 208 256 IPR036879 GO:0003677|GO:0046983
Amo20g2263 256 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 192 255 - -
Amo20g2263 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 205 252 IPR002100 GO:0003677|GO:0046983
Amo20g2263 256 ProSiteProfiles MADS-box domain profile. 196 256 IPR002100 GO:0003677|GO:0046983
Amo20g2263 256 SMART madsneu2 196 255 IPR002100 GO:0003677|GO:0046983
Amo20g2263 256 Pfam BRCA1-associated protein 2 129 169 IPR011422 -
Amo20g2263 256 SUPERFAMILY SRF-like 197 255 IPR036879 GO:0003677|GO:0046983
Amo20g2263 256 MobiDBLite consensus disorder prediction 20 39 - -
Amo20g2263 256 PRINTS MADS domain signature 218 233 IPR002100 GO:0003677|GO:0046983
Amo20g2263 256 PRINTS MADS domain signature 198 218 IPR002100 GO:0003677|GO:0046983
Amo20g2263 256 PRINTS MADS domain signature 233 254 IPR002100 GO:0003677|GO:0046983
Amo20g2263 256 CDD MADS_MEF2_like 197 255 IPR033896 GO:0000977|GO:0045944
Amo20g2263 256 PANTHER MADS BOX PROTEIN 192 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2263 Amo-Chr20 105336661 105337844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2263 186 255 MADS-box Gene Family AT2G42830 78.667 1.39e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo20g2263 SRF-TF 4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2263 K09264 - aip:107624459 440.269