Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2260 ATGAAGTTGCGGTTATTCATCGTTGTGCTTGTCCTTCTAAGCTTCATAGTTTCACTCTTTGAATTGATTGTAGCTGATTTAAACTCTGACAAACAAGCTCTCTTAGAGTTTGCTTCAGCCGTTCCACATGCACCAAGGCTAAACTGGAATGAATCTACTTCAGTTTGCAACTCATGGATTGGTGTGACTTGTAACTCGAACAGAACCCGAGTCACCGGCATCCGTCTCCCGGGAATTGGACTAACCGGTTCAATTCCAGAGAACACTTTAGGAAAACTAGACACTCTTAGAGTCCTTAGCCTTCATTCAAATGGCCTTAAAGGAAATCTTCCTTCTGACATAGTTTCCATTCCTTCACTCCAATTTGCACTGCTTCACCACAATAATTTCTCAGGTCCAATTCCATCCTCTGTCTCCCCTAAACTCGTGGCATTCGATGTTTCCTTTAACTCCTTCTCTGGAAGAATTCCACCAGCATTTCAGAATCTGAGAAGACTCACCTGGTTGTATTTACAAAACAACAACATTTCTGGAACTATCCCTGAATTCAACCTTCCAAGGCTTAAACAATTGAATTTGAGCTATAATAACCTGAACGGAACAATTCCAAATTCTGTTAAGACATTTCCTTACACTTCTTTCGTAGGTAACTCGCGCTTATGCGGACCGCCTCTCAACAATTGCTCATCGATATCCCCTTCTCCATCTCCTTCCCCTGAGTATCAACCATCCTCTCCATCAACTACACAAGATCAAAAGGATCATAAGAATAACTTTGGCCTAGCTACTATACTTGCTCTTGTCATTGGAGGCATTGCATTTCTCTCCCTGCTAGTTTTAGTGTTCTTTATATGCTGTCTGAAGCGAAAACCGAAAGACAGTACTAAAAAAAGCGGTGGCATACTCAAAGGGAAGGGATCTTGTGCTGGAAAGACTGAGATTTCCAAGAGTTTTGGGAGTGGAGTTCAAGAGGCCGAAAAGAACAAGTTATTCTTCTTTGAAGGTTCATCTTATAGCTTTGATCTTGAGGACTTACTGAAGGCTTCGGCCGAAGTTCTTGGTAAAGGGAGTTATGGAACAGCATACAAGGCTGTTTTGGAGGAAGGAACAACTGTGGTAGTTAAGCGGTTGAAGGAAGTTGTTGTTGGAAAGAAGGAGTTTGAGCAGCAGATGGAAATTGTTGGGAGGATTGGACGCCACCCGAATGTCATGCCGCTTCGTGCTTATTACTATTCCAAAGATGAGAAGCTTCTAGTTTATAACTTCATGCTTGGTGGAAGCTTGTTTCACTTGTTGCATGGAAACAGGGGTGCAACAAGAACTCCATTAGACTGGGATTCAAGGGTGAAGATTTCACTTGGAGCAGCCAAGGGAGTTGCATTCATTCACTCTGAATGCGGTCCAAAGTTCACACATGGCAACATCAAATCCACCAATGTTCTCATATCCCAAGAACTTGATGCCTGCATATCCGATGTTGGCTTGCCTCCACTGATGAACACTCCGGCAACCATGTCAAGAGCCAATGGCTACCGTGCTCCAGAAGTAACTGATGCGAAGAAGATCACACAAAAATCTGATGTGTACAGCTTTGGTGTGCTGCTTCTTGAAATGTTGACAGGGAAGACACCAATGAGGCATCCGGGGCATGAAGACATCGTCGATCTTCCAAGGTGGGTGAAGTCTGTTGTTAGAGAAGAATGGACAGCTGAAGTTTTCGATGAGGAGCTTCTAAGAGGCCAATACGTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCATTGGCTTGTGTTGCTAAGGCACCTGATATGAGGCCTAGAATGGATGAAGCTGTTAGGATGATAGAGGAAATAAAGCACCCCGAGTCAAAGAACCGGCCGTCCTCTGAGTCGGAGTCTAATGCGCAAACACCATAA 1917 0.4387 MKLRLFIVVLVLLSFIVSLFELIVADLNSDKQALLEFASAVPHAPRLNWNESTSVCNSWIGVTCNSNRTRVTGIRLPGIGLTGSIPENTLGKLDTLRVLSLHSNGLKGNLPSDIVSIPSLQFALLHHNNFSGPIPSSVSPKLVAFDVSFNSFSGRIPPAFQNLRRLTWLYLQNNNISGTIPEFNLPRLKQLNLSYNNLNGTIPNSVKTFPYTSFVGNSRLCGPPLNNCSSISPSPSPSPEYQPSSPSTTQDQKDHKNNFGLATILALVIGGIAFLSLLVLVFFICCLKRKPKDSTKKSGGILKGKGSCAGKTEISKSFGSGVQEAEKNKLFFFEGSSYSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQQMEIVGRIGRHPNVMPLRAYYYSKDEKLLVYNFMLGGSLFHLLHGNRGATRTPLDWDSRVKISLGAAKGVAFIHSECGPKFTHGNIKSTNVLISQELDACISDVGLPPLMNTPATMSRANGYRAPEVTDAKKITQKSDVYSFGVLLLEMLTGKTPMRHPGHEDIVDLPRWVKSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKAPDMRPRMDEAVRMIEEIKHPESKNRPSSESESNAQTP* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2260 638 Pfam Protein kinase domain 351 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2260 638 Pfam Leucine Rich repeats (2 copies) 165 202 IPR025875 -
Amo20g2260 638 Gene3D Phosphorylase Kinase; domain 1 312 422 - -
Amo20g2260 638 Gene3D Ribonuclease Inhibitor 141 229 IPR032675 -
Amo20g2260 638 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Amo20g2260 638 ProSiteProfiles Protein kinase domain profile. 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2260 638 PANTHER OS05G0588300 PROTEIN 4 636 - -
Amo20g2260 638 CDD STKc_IRAK 353 618 - -
Amo20g2260 638 Gene3D Transferase(Phosphotransferase) domain 1 423 637 - -
Amo20g2260 638 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Amo20g2260 638 SUPERFAMILY Protein kinase-like (PK-like) 351 618 IPR011009 -
Amo20g2260 638 MobiDBLite consensus disorder prediction 231 254 - -
Amo20g2260 638 PANTHER RECEPTOR-LIKE KINASE 4 636 - -
Amo20g2260 638 SUPERFAMILY L domain-like 40 225 - -
Amo20g2260 638 ProSitePatterns Protein kinases ATP-binding region signature. 353 384 IPR017441 GO:0005524
Amo20g2260 638 MobiDBLite consensus disorder prediction 616 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2260 Amo-Chr20 105308930 105311815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2260 10 633 Receptor kinase-like Gene Family AT5G58300 59.649 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo20g2260 Pkinase 4.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2260 - - aprc:113868460 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1757 10 62402071 62404728 Amo20g2260 20 105308930 105311815 hybridization
Amo17g1083 17 28671613 28674573 Amo20g2260 20 105308930 105311815 PCT
Amo07g1976 07 59009637 59012543 Amo20g2260 20 105308930 105311815 PCT
Amo20g2260 20 105308930 105311815 Amo17g1083 17 28671613 28674573 PCT
Amo20g2260 20 105308930 105311815 Amo07g1976 07 59009637 59012543 PCT