Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2249 CAGCAGCTAGTTTGTATCATTATATATGTGACCCTTGGCCGAGTGTTTCGTTCTTTTCCTCCTTTCAACTGCCAAAATATTATAACAGCAGCAGCAGCCGCTCCACCAACACAACCGTTCTTCTTCTCGTTTACGGGGGTTGAGGGAGGAACCCTAATTTGGATTGAATTAGGTGTTATGGAGAAGGAGCTAATCGAGCTCTACGATGCAGCCAAGAAGGCCGCCGATGCCGCCAGCYGCGAAGACGCCGGCCCTCACGAAGAGTCCCGATGTATCGATGCCCTCAATCAGCTCAAGAAATTCCCCGTCAATTACAAGATTCTCGTCAGCACCCAGGTTGGCAAACATCTTAAACATATAACAAAGCATCCAAGGCAGAAAATTCGGGCATTTGCTCATGACCTAATTGAGATATGGAAAGACATAATATTAACCGAAACAGGCAGAATAAAGAATGGGGGCTCTGATAACAAAGACTCGGCAAATGGTGATAGATCTAAATCTGGAAAAATGCAGAAGAGTCCTTCTGTGAAGGTTGAGAAGGTTGAAAATGGTACATCAAGGTCAATCTCAGCAAAGGTACACCATGTGGATGGCAAAATTGAAAAAAATAATGGTGCTGCGAATGTCAAGGTGGAAAAGATAGTCAAGGAAGAGATGCAAGTTTCTGGAACAAAGAAAATGTCAACAAGCTCACCTGTTACCCCAAAGCTGAAGACTATGATTAAATCTAATGATGCGATGAGAGACAAAATACGGGATCTTCTCCATGAGGCTTTATCCAAGGTTTCAGGAGAGGCTGAGGAGGATATGGTGGAYGAAGTAAATGCCTGTGATCCTATTCGTGTTGCTGTGAAAGTYGAGTCTGTGCTCTTTGAAAAGTGGGGCCCTTCAAATGGTGCGCAAAAGGTCAAGTATAGGTCCCTGATGTTTAACTTGAAGGATCAAAACAACCCAGATTTTCGGAGAAAAGTTCTACTCGGCTATATTGARCCAGAACGGTTAATCAATATGAGCACGGCTGACATGGCTAGTGAGCAGAGGAAGAAAGAGAACGAGAAGATCTATGAGAAGGCATTGTTTGAATGTGAACGTGGAGGTCCACCAAAAGCTACGACAGATCAATTCAAGTGTGGGAGATGTGGTCAAAGGAAATGCACCTATTACCAAATGCAGACTCGTAGTGCTGATGAACCTATGACAACTTATGTCACTTGTACTGTCTGCAGCAACCGTTGGAAGTTCTGTTAA 1251 0.438 QQLVCIIIYVTLGRVFRSFPPFNCQNIITAAAAAPPTQPFFFSFTGVEGGTLIWIELGVMEKELIELYDAAKKAADAASXEDAGPHEESRCIDALNQLKKFPVNYKILVSTQVGKHLKHITKHPRQKIRAFAHDLIEIWKDIILTETGRIKNGGSDNKDSANGDRSKSGKMQKSPSVKVEKVENGTSRSISAKVHHVDGKIEKNNGAANVKVEKIVKEEMQVSGTKKMSTSSPVTPKLKTMIKSNDAMRDKIRDLLHEALSKVSGEAEEDMVDEVNACDPIRVAVKVESVLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGYIEPERLINMSTADMASEQRKKENEKIYEKALFECERGGPPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCTVCSNRWKFC* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2249 416 SUPERFAMILY Zinc beta-ribbon 357 414 - -
Amo20g2249 416 ProSitePatterns Zinc finger TFIIS-type signature. 378 413 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo20g2249 416 SUPERFAMILY Elongation factor TFIIS domain 2 233 346 IPR036575 GO:0006351
Amo20g2249 416 CDD Zn-ribbon_TFIIS 369 415 - -
Amo20g2249 416 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 57 156 IPR035441 -
Amo20g2249 416 ProSiteProfiles TFIIS N-terminal domain profile. 69 146 IPR017923 -
Amo20g2249 416 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 60 416 - -
Amo20g2249 416 SMART mid_6 246 354 IPR003618 GO:0006351
Amo20g2249 416 Pfam TFIIS helical bundle-like domain 94 143 IPR017923 -
Amo20g2249 416 ProSiteProfiles TFIIS central domain profile. 248 371 IPR003618 GO:0006351
Amo20g2249 416 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 58 157 IPR035441 -
Amo20g2249 416 Gene3D - 345 416 - -
Amo20g2249 416 Gene3D - 222 344 IPR036575 GO:0006351
Amo20g2249 416 MobiDBLite consensus disorder prediction 167 188 - -
Amo20g2249 416 SMART Cys4_2 376 415 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo20g2249 416 MobiDBLite consensus disorder prediction 150 188 - -
Amo20g2249 416 Pfam Transcription factor S-II (TFIIS) 376 414 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo20g2249 416 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 60 416 - -
Amo20g2249 416 CDD TFIIS_I 87 143 - -
Amo20g2249 416 Pfam Transcription factor S-II (TFIIS), central domain 245 362 IPR003618 GO:0006351
Amo20g2249 416 PIRSF TFIIS 61 416 IPR035100 -
Amo20g2249 416 TIGRFAM TFSII: transcription elongation factor S-II 71 416 IPR006289 GO:0003676|GO:0005634|GO:0006368
Amo20g2249 416 ProSiteProfiles Zinc finger TFIIS-type profile. 374 414 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo20g2249 416 SMART TFS2_5 67 145 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2249 Amo-Chr20 104512968 104515695 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo20g2249 TFIIS_M 8.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2249 K03145 - gmx:100811982 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1744 10 62137270 62140005 Amo20g2249 20 104512968 104515695 hybridization