Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2185 ATGAAGATCAATCCTTCTTTCTGGACTATCATTGTTTACACATTAGTTATTGCCACTCCCTTCTTTCATCATGAATCCAATGCAATGAACACTTCTATCATTACCCCAAACCTATGCCTCGGTGACGGCAAGACCATAGTTTCCAAAGATAAAGGAACCTTTGAACTTGGCTTCTTCACAAAATCCAACAAACGCTACCTTGGAATTTGGTACGCCAACATCACAATCCAGACCATTGTGTGGGTGGCGAACGGTGCCAACCCCATCAACGATTATTCCCCTGTTACCCCTCCCATTTTAGAACTTAAAAGCAATGGAAGCTTGGTTCTTACTCACAAGAACGTTCTTGTATGGCAAACAATCAGCAGTTCCCCGGCAACCGCAGTGCGGAATCCGGTGGCGGAGCTTCTTGATTCCGGCAATCTTGTGATAAGAGAGGACAATGATACAAACCCACAACGCTATTTGTGGCAGAGCTTTGACTACCCTTCGAATACAATGTTGGCAGGGATGAAACTGGGATGGGACATTAGAAGAAATTTCAACAGGAAGATCACAGCTTGGAAGACTGATGATAATCCAGCACCAGGTGACTTTTCTTGGAGTGTTATGCGGTACAYCTACCCTGAAGTGTATATGACGAAGAGAASAAGAAAGATGTACAGAATTGGACCCTGGAACGGCTTGCGTTTCAGTGGCATGCCAGAACTGAGATCCAATCCAATKTTTAATTTCAACTTCGTCTCCACTGCTGAAGAAGTTTACTACACATGGACCCTCAAGGACCCTTCTCTAACAACCATCGCAGTSCTTAACCAGAGCGCGGGCGGCCGCCCTCGCTACGTTTGGTCGGAGGCCGATYAATCSTGGAGGACTTATTCAACTTTGCCAGGGGACTATTGTGATACCTATGGACTGTGTGGTCCTAATGGATATTGTAGCATAACTTCATCACCAGTGTGTGAGTGTTTGAAAGGGTTTAAGCCCAAGTTTCCCAAAAAGTGGAACTCAATGGATTGGTCCCAAGGATGTGAAAGAAACCATCCAATAAGGTGCAATAGTAATGGTACCAATGAGGATGGTGATGGGTTTGTGCTTTTGCAGYGATTGAAAGTGCCAGATACTGAATATACTTTGGTGTATAAGGATATTGATTTGAATAAATGTAGAGCCATGTGCTTGGAAAATTGTTCATGCATGGCTTATACAAACTCAGATATAAGAGGAGGTGGTCAAGGCTGTGTCATGTGGTTTCATGATTTAATTGATATCAAACTGTTTCCTGATGGTGGACAGGAACTATACGTCCGACTGCGTGCTTCTGACTTGGGTGCTGAGCATACACAAAAGAGAATGAAAATAATAGTTGGAACCACTATTGCCGCAGCACTTATTTCGGTAACTACTTATTCTGCCTACAGATTCAGGAAAAAGATTGCAGGTAAAATTATTCACTTTACTCAGGTCTTTAAAAATGCTTGCTTCAATTCTATATACAATCTTACAAATGATATTTCTGCTTTCAGCGAATTCCCTTATGTAGATGATTTGGATCTTCCATTGCTTAATTATTCAACAATTATGGTTGCTAGTAATAACTTCTCAGCGAAGAATAAGATTGGAGAAGGTGGTTTTGGACCAGTATATTTGGGAAAATTAGCAAATGAACAAGAAGTTGCTATAAAGAGACTATCAAAGAGTTCAATACAAGGATTTTCTGAGTTCATAAATGAAGTTAAACTAATTGCAAAACTTCAACATCGAAATCTTGTAAAACTTATTGGTTGTTGCATTCAAGGACAAGAGAAGATGCTAGTTTATGAATACATGACCAACGGTAGCTTAGATTACTTCATTTTCGATCATAGCAAAGGAAAATTGCTAAACTGGCAAAAGCGCAATCACATAATAGGTGGAATCGCTAGAGGCCTTATGTATCTTCATCAAGATTCTCGACTGAGAATTGTACATAGAGATCTTAAAGCGAATTTTGGAATGGCTAGACTTTTTAGAGGAGAGCAAAACGAAGAAAGTACAAATAAAATTGTTGGGACTTTTGGATACATGGCACCAGAGTATGTCCTTGATGGATTATTTTCGGTAAAATCTGATGTTTACAGTTTTGGCGTTTTATTGCTAGAGATTATAAGTGGGAAAAAGAATAGAAGATCTCATGCAAAGCAATCATCCCTTAACCTCATTGATCATACATGGGCACTGTGGAAAATGGGCAATGCTTTCCAAATAATTGACCCAAATATTGAAGACTCATGCATTGAATCTGAAGTATTGCGTTTCATCCATATTGCTCTATTGTGCGTACAACATTGTCCAGAAGATAGACCTAATATGACCTCAGTAGTTCTAATGTTAAGTAGTGAGATGGAATTGGATCAACCTAAAGAGCCTGGTTTTTTCACTAGGAGGGAAAATGTTGAAGCAAATTCATGCACAAGTTACCCAAGTTCAAATAATGAAATTAGCATAACCTTATTAACTGGCAGATTTAATAACATTTAG 2520 0.3952 MKINPSFWTIIVYTLVIATPFFHHESNAMNTSIITPNLCLGDGKTIVSKDKGTFELGFFTKSNKRYLGIWYANITIQTIVWVANGANPINDYSPVTPPILELKSNGSLVLTHKNVLVWQTISSSPATAVRNPVAELLDSGNLVIREDNDTNPQRYLWQSFDYPSNTMLAGMKLGWDIRRNFNRKITAWKTDDNPAPGDFSWSVMRYXYPEVYMTKRXRKMYRIGPWNGLRFSGMPELRSNPXFNFNFVSTAEEVYYTWTLKDPSLTTIAVLNQSAGGRPRYVWSEADXSWRTYSTLPGDYCDTYGLCGPNGYCSITSSPVCECLKGFKPKFPKKWNSMDWSQGCERNHPIRCNSNGTNEDGDGFVLLQXLKVPDTEYTLVYKDIDLNKCRAMCLENCSCMAYTNSDIRGGGQGCVMWFHDLIDIKLFPDGGQELYVRLRASDLGAEHTQKRMKIIVGTTIAAALISVTTYSAYRFRKKIAGKIIHFTQVFKNACFNSIYNLTNDISAFSEFPYVDDLDLPLLNYSTIMVASNNFSAKNKIGEGGFGPVYLGKLANEQEVAIKRLSKSSIQGFSEFINEVKLIAKLQHRNLVKLIGCCIQGQEKMLVYEYMTNGSLDYFIFDHSKGKLLNWQKRNHIIGGIARGLMYLHQDSRLRIVHRDLKANFGMARLFRGEQNEESTNKIVGTFGYMAPEYVLDGLFSVKSDVYSFGVLLLEIISGKKNRRSHAKQSSLNLIDHTWALWKMGNAFQIIDPNIEDSCIESEVLRFIHIALLCVQHCPEDRPNMTSVVLMLSSEMELDQPKEPGFFTRRENVEANSCTSYPSSNNEISITLLTGRFNNI* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2185 839 Pfam Protein tyrosine and serine/threonine kinase 536 788 IPR001245 GO:0004672|GO:0006468
Amo20g2185 839 Gene3D Phosphorylase Kinase; domain 1 514 609 - -
Amo20g2185 839 CDD PAN_AP_plant 348 438 - -
Amo20g2185 839 SUPERFAMILY Protein kinase-like (PK-like) 520 805 IPR011009 -
Amo20g2185 839 Pfam PAN-like domain 358 424 IPR003609 -
Amo20g2185 839 Pfam S-locus glycoprotein domain 221 331 IPR000858 GO:0048544
Amo20g2185 839 Pfam Domain of unknown function (DUF3403) 792 835 IPR021820 GO:0004674
Amo20g2185 839 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 40 832 - -
Amo20g2185 839 SMART ntp_6 359 438 IPR003609 -
Amo20g2185 839 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 40 832 - -
Amo20g2185 839 PIRSF SRK 2 835 IPR024171 GO:0004674
Amo20g2185 839 Gene3D Transferase(Phosphotransferase) domain 1 610 804 - -
Amo20g2185 839 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 194 IPR036426 -
Amo20g2185 839 Gene3D - 27 160 IPR036426 -
Amo20g2185 839 ProSiteProfiles PAN/Apple domain profile. 352 439 IPR003609 -
Amo20g2185 839 ProSiteProfiles EGF-like domain profile. 297 333 IPR000742 -
Amo20g2185 839 Pfam D-mannose binding lectin 78 189 IPR001480 -
Amo20g2185 839 CDD B_lectin 40 163 IPR001480 -
Amo20g2185 839 ProSiteProfiles Protein kinase domain profile. 534 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2185 839 ProSiteProfiles Bulb-type lectin domain profile. 31 157 IPR001480 -
Amo20g2185 839 SMART blect_4 37 163 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2185 Amo-Chr20 99610233 99620023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2185 522 805 Receptor kinase-like Gene Family AT4G23230 56.187 7.66e-108 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo20g2185 PK_Tyr_Ser-Thr 4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2185 - - ahf:112733195 1511.89