Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2181 ATCAAGCTCACCGTAGCATCTGAGATCAGAGGGAGAGTAACCGGCGATGCCTGCGACGCCATCCTTGCCGAGGTCCAAGAGCAGGTTTCCATCCTCAACTCCACTTTCTCATGGAAGGAGTCAGATCGAGCCGCCGCCAAGCGCCACTCACGCGCTCGCCGATCTTGCAAAAAACGCAATCAGCACCTCCAAGCTCCTCTCGTGACGGAAGAAGACCTCGTTCAGAAGCTGTTGCTGTTTGAGCATGAGGTTGAGAAAGTCCGCTATTTGCACATTTCTGGAACAGTTTCTGCTTATGAGAGCTTGACCCTTCGAGGTTATGATGTTGTTGCTGTTGTTTTGGGAGATCACAGCCTTCTAAAAGAGGGTCGAATAATGTCTTATATGCGGAACAATTTTCTTTCTAGGCCTTATTGGAGGTGTTACTTTCCAATTACTCAAGCAATAATCTATGTTGTTGATTCAAGTGATACCGATAGGCTTGTGATAGCTAAGGAAGAGTTCCATGCTATTCTGGAGGCTGACTCTGAAGTTCACATACACTGGAAAGGTGCTACTGAGATTGTCCTAGCCTGTTGTCCACGGTACATTGATGCAAATGACCAATTGATAGACATGGATGAGGAAAAGGATCCTTGTCGACCTGGAGTCAAAGATTCAGTGGAGCTTTGCCAAAAATATGGGGTTAAGCTTACAGTAAATGTAGCAGCTCTTGTTATAAATGTTGTTGCTGTTGTTTCCTCTGGTGATGTCCCACTGAATGCAGTGCAGATTTTGTGGGTGAATCTTATCATGGATACTTTGGGAGCACTAGCATTGGCAACTGAACCACCAACTGACCATCTTATGGATTGGGCCCGAAGGTCGGAACTTCAGTTTCTCTAA 885 0.461 IKLTVASEIRGRVTGDACDAILAEVQEQVSILNSTFSWKESDRAAAKRHSRARRSCKKRNQHLQAPLVTEEDLVQKLLLFEHEVEKVRYLHISGTVSAYESLTLRGYDVVAVVLGDHSLLKEGRIMSYMRNNFLSRPYWRCYFPITQAIIYVVDSSDTDRLVIAKEEFHAILEADSEVHIHWKGATEIVLACCPRYIDANDQLIDMDEEKDPCRPGVKDSVELCQKYGVKLTVNVAALVINVVAVVSSGDVPLNAVQILWVNLIMDTLGALALATEPPTDHLMDWARRSELQFL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2181 294 Pfam Cation transporting ATPase, C-terminus 251 289 IPR006068 -
Amo20g2181 294 Gene3D - 77 191 IPR027417 -
Amo20g2181 294 Gene3D - 228 292 - -
Amo20g2181 294 PANTHER CATION TRANSPORTING ATPASE 169 209 - -
Amo20g2181 294 PANTHER CATION TRANSPORTING ATPASE 230 285 - -
Amo20g2181 294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 175 IPR027417 -
Amo20g2181 294 Pfam ADP-ribosylation factor family 136 176 IPR006689 GO:0003924|GO:0005525
Amo20g2181 294 PANTHER CALCIUM-TRANSPORTING ATPASE 169 209 - -
Amo20g2181 294 PANTHER CALCIUM-TRANSPORTING ATPASE 230 285 - -
Amo20g2181 294 SUPERFAMILY Calcium ATPase, transmembrane domain M 230 284 IPR023298 -
Amo20g2181 294 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 174 209 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2181 Amo-Chr20 99356097 99360280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2181 230 283 Primary Pumps ATPases AT5G57110 90.741 9.11e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2181 - - aip:107615060 98.2117