Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2173 ATGTCCACAAACAAGCATGATGTTAAGAATGATTCAGATGATGATTTGGGTGATGATTTCGATTATGAACTGACTCCACAAGATGATGTTGATTCGTTGAATTTTACTAGCAAGAGTGAACAAGATTGTGGTGTAAAAAGAATAACAAATTTAATGGTAGAGGATATTTGGAACTTGGAGTTTAGGACAGAGGATGATGCTTGCCAATTTTATAATGCTTATGCTTGTTGGCATGGCTTCGTAATGAGGAAGGATGACGTCGTGAGGGCTAAGGAAGGTAAAATCATTTGCAGAAAACTTGTCTGCAATAAGGAGGGTTGGAGGAACATGAGGTATATTGATTTGGATAATAGATCAAGGGAGGCAAGGTCACTCACGCGAACCAAGTGTCCAGCTCGGCTCAAGGTAAAGGTTGACTACGGCTGTGGTAGATTGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATTTGACGCCCCCCCAATTTGCGCATCTTGTTCCAGCCAATTGTCGTCTCACTGTTACTGATAAAGTTCAAGTGAAAAATCTTCATAATTTTGGTGTCAAGACGTGCCATATTATGGGATATATTGCGTTCCAAAAGGGTATAAACTCTCTCATCAGATTTTACGTTAATCGAAAGAATACTCTCATCGACTTCATGCATAACCTGGATAGGGCCTTAAAAGAGTATAGAAACAATGAATTAATAGCTGACTTTAAGTGTTGGTGCTCTGAGCCAGTGATGATTACTTCGTTGGAGGTATACGAAAGATTTGCATCATGTTATTTCACTCGCAACATTTTTAAGGAAATTCGTAACGAGATTCAGAGGGCAGGAACTTTGAATATCAAGGTATTAAGCACAAACTTGGATAAAGTTGAGTTCAGTGTGACTGCTCTCGGAGATCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAAGTAAAAATCTATTCTCGTGCTCGTGCAAGCTGTTGGAATCACGCGGCATTCCCTGTAGTCACATTTTCTATGCCATGAAGTTCAAAAACCTCCTTGAGTTTCCAGAGTCGTTGATCTACAAAAGGTGGACAAAGAATGCAAAGAATGAATTTATTAGCACAGAAATGCTTGTTAATGATGACGTCGAAAGGGTGTTAAAGTTTTGA 1152 0.3984 MSTNKHDVKNDSDDDLGDDFDYELTPQDDVDSLNFTSKSEQDCGVKRITNLMVEDIWNLEFRTEDDACQFYNAYACWHGFVMRKDDVVRAKEGKIICRKLVCNKEGWRNMRYIDLDNRSREARSLTRTKCPARLKVKVDYGCGRLKVSCFVESHNHDLTPPQFAHLVPANCRLTVTDKVQVKNLHNFGVKTCHIMGYIAFQKGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELIADFKCWCSEPVMITSLEVYERFASCYFTRNIFKEIRNEIQRAGTLNIKVLSTNLDKVEFSVTALGDPAKDRRVEVDRSKNLFSCSCKLLESRGIPCSHIFYAMKFKNLLEFPESLIYKRWTKNAKNEFISTEMLVNDDVERVLKF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2173 383 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 202 364 IPR031052 GO:0006355
Amo20g2173 383 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 51 173 IPR031052 GO:0006355
Amo20g2173 383 ProSiteProfiles Zinc finger SWIM-type profile. 309 345 IPR007527 GO:0008270
Amo20g2173 383 SMART 26again6 320 347 IPR006564 GO:0008270
Amo20g2173 383 MobiDBLite consensus disorder prediction 1 21 - -
Amo20g2173 383 Pfam FAR1 DNA-binding domain 69 159 IPR004330 -
Amo20g2173 383 PANTHER OS03G0181600 PROTEIN 51 173 - -
Amo20g2173 383 PANTHER OS03G0181600 PROTEIN 202 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2173 Amo-Chr20 98732928 98734821 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g2173 FAR1 1.4e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2173 - - aip:107640898 527.324