Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2171 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGTAATCTGCCCTCGGATATAAGAGAATCAGAAATAGAAGATTTATTCTACAAGTATGGCCGTATCATGGATATTGAATTGAAGATTCCACCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGAAGCAATTCGAGGTCGAGATGGGTACAACTTTGATGGTTGTCGTTTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCCATCATCAAGTGATCGTCGTGGCTATGGTGGTGGAGGTGGCGGCGGTGGTGGTGGTGGGGGCCGTTTTGGGGTATCACGCCATTCTGAATACCGAGTTATTGTTCGTGGACTTCCCTCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTATGCTTTGCTGAGGTTTCCCGTGATAGCGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGATACTGAGTTTAGAAACCCTTGGGCAAGAGCTTATATTCGGGTGAGGAAGTATGAGGGTAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGTAGAAGTCCTAAGAGGGATAGAAGATCATTGGAGCGATCTCTGTCTAGGTCACGTTCTAGATCCAGATCCGCATCCCCAATCAAGGCTTCAAGGCCAAGATCACGATCGCGRTCTGCATCACCACACCAGGTATTTAAAGATTTTGAACTAAATGATTTTAGTATGGGGTGTAGATTCCTGTTTGYGTGTATTCATTTAACCTGTATTTATSGTGTCTTCCCAACTKTGCCCAGGTGTCTGCCTCTATTTTGCTTTACATTTATGTATATTAATTCAGAAGCATTAATTATTTAA 915 0.4415 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYEGSRSRSRSRSPSRSRSPKRDRRSLERSLSRSRSRSRSASPIKASRPRSRSRSASPHQVFKDFELNDFSMGCRFLFXCIHLTCIYXVFPTXPRCLPLFCFTFMYINSEALII* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2171 304 Gene3D - 115 193 IPR012677 -
Amo20g2171 304 MobiDBLite consensus disorder prediction 226 245 - -
Amo20g2171 304 Gene3D - 2 114 IPR012677 -
Amo20g2171 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Amo20g2171 304 CDD RRM1_SF2_plant_like 8 79 - -
Amo20g2171 304 SMART rrm1_1 117 186 IPR000504 GO:0003723
Amo20g2171 304 SMART rrm1_1 8 78 IPR000504 GO:0003723
Amo20g2171 304 MobiDBLite consensus disorder prediction 81 108 - -
Amo20g2171 304 CDD RRM2_SF2_plant_like 116 191 - -
Amo20g2171 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Amo20g2171 304 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 250 - -
Amo20g2171 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 180 IPR000504 GO:0003723
Amo20g2171 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Amo20g2171 304 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 250 - -
Amo20g2171 304 MobiDBLite consensus disorder prediction 210 225 - -
Amo20g2171 304 MobiDBLite consensus disorder prediction 195 245 - -
Amo20g2171 304 SUPERFAMILY RNA-binding domain, RBD 6 186 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2171 Amo-Chr20 98642348 98646300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2171 8 174 Eukaryotic Initiation Factors Gene Family AT4G34110 24.855 1.23e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2171 K12890 - gmx:100800653 353.984