Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo20g2171 | ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGTAATCTGCCCTCGGATATAAGAGAATCAGAAATAGAAGATTTATTCTACAAGTATGGCCGTATCATGGATATTGAATTGAAGATTCCACCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGAAGCAATTCGAGGTCGAGATGGGTACAACTTTGATGGTTGTCGTTTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCCATCATCAAGTGATCGTCGTGGCTATGGTGGTGGAGGTGGCGGCGGTGGTGGTGGTGGGGGCCGTTTTGGGGTATCACGCCATTCTGAATACCGAGTTATTGTTCGTGGACTTCCCTCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTATGCTTTGCTGAGGTTTCCCGTGATAGCGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGATACTGAGTTTAGAAACCCTTGGGCAAGAGCTTATATTCGGGTGAGGAAGTATGAGGGTAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGTAGAAGTCCTAAGAGGGATAGAAGATCATTGGAGCGATCTCTGTCTAGGTCACGTTCTAGATCCAGATCCGCATCCCCAATCAAGGCTTCAAGGCCAAGATCACGATCGCGRTCTGCATCACCACACCAGGTATTTAAAGATTTTGAACTAAATGATTTTAGTATGGGGTGTAGATTCCTGTTTGYGTGTATTCATTTAACCTGTATTTATSGTGTCTTCCCAACTKTGCCCAGGTGTCTGCCTCTATTTTGCTTTACATTTATGTATATTAATTCAGAAGCATTAATTATTTAA | 915 | 0.4415 | MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYEGSRSRSRSRSPSRSRSPKRDRRSLERSLSRSRSRSRSASPIKASRPRSRSRSASPHQVFKDFELNDFSMGCRFLFXCIHLTCIYXVFPTXPRCLPLFCFTFMYINSEALII* | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo20g2171 | 304 | Gene3D | - | 115 | 193 | IPR012677 | - | |
Amo20g2171 | 304 | MobiDBLite | consensus disorder prediction | 226 | 245 | - | - | |
Amo20g2171 | 304 | Gene3D | - | 2 | 114 | IPR012677 | - | |
Amo20g2171 | 304 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
Amo20g2171 | 304 | CDD | RRM1_SF2_plant_like | 8 | 79 | - | - | |
Amo20g2171 | 304 | SMART | rrm1_1 | 117 | 186 | IPR000504 | GO:0003723 | |
Amo20g2171 | 304 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
Amo20g2171 | 304 | MobiDBLite | consensus disorder prediction | 81 | 108 | - | - | |
Amo20g2171 | 304 | CDD | RRM2_SF2_plant_like | 116 | 191 | - | - | |
Amo20g2171 | 304 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 116 | 194 | IPR000504 | GO:0003723 | |
Amo20g2171 | 304 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR SR34A | 2 | 250 | - | - | |
Amo20g2171 | 304 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 118 | 180 | IPR000504 | GO:0003723 | |
Amo20g2171 | 304 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
Amo20g2171 | 304 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 2 | 250 | - | - | |
Amo20g2171 | 304 | MobiDBLite | consensus disorder prediction | 210 | 225 | - | - | |
Amo20g2171 | 304 | MobiDBLite | consensus disorder prediction | 195 | 245 | - | - | |
Amo20g2171 | 304 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 186 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo20g2171 | Amo-Chr20 | 98642348 | 98646300 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo20g2171 | 8 | 174 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 24.855 | 1.23e-07 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo20g2171 | K12890 | - | gmx:100800653 | 353.984 |