Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2153 ATGGGTGAATTTGGCGTTTCGCTCAAGGAAACTAAAAAAAATAGTGTTGCTGCTGCTACTAGTAATAGTAATGTTCTTGGGTTGGGTAGTGTGAGTAACAAGGTGCAGGTGCAGCAGCAGCAGCAGCATAATAATATTAATATTAATAATAATTATCTTGAAGCATTTCCTAGTAAGACGAGGATGATGATGATGATGATGATGGTGCATCATAATCATCACCACCATCCATTTGACAGTGATTCATCTGCTTCTGCTCTCGGTGATGATGGTGATGGTGATGGTCCCACGCTTCAGCACCATTTGTTAACTACTAATCATAATCATAGTATAAACAACGCTGCAGCTGCTAATAGTGGTGTTAATACCGTTGTTGTTGATGATGATGATGATGGTGCAGCAGCATCTGTAGAAGAAACAAGACAACCTTTGCAGCAGCCATTTCACTTTTCTCACTCTCCGTATTATTCTCCTTCTTCTGCTACTACAACTACAACCACAACCACAACCACTACTCGCTATCCCTTCAAATCGCCAGGAACAAGTGGTGGAATGATGGCGGCATCTTTAGGGAGGTTCCCTTTCACAAGTGCTCAATGGAGGGAACTTGAAAGACAAGCTATGATTTACAAGTACATGATGGCTTCTATTCCTGTTCCTCCAGAGCTACTCCTTATGCCTATCGCTGCTGCTTCTCGCTCATCTCCTTTGGAAGGAGGAGGAGGAGGAGGTGGTGGTTTCAATCTGAGGCTTTCAAGCAGTAACAATAATGATGCAGAACCAAATAGGTGCAGGAGAACAGATGGTAAGAAATGGAGATGTTCAAGAGAGGTTGCTCCTAATCACAAGTACTGTGAGCGTCATATGCATAGAGGCCGTCCCCGTTCAAGAAAGCCTGTGGAACTTCACAACAACAACAATAACAATGGACACAATCTACTTAAGAGGGCTCGCCATGATTCTCATCCTTATGCTGCCTCTAGTGCTGCTGTTACTGTCGCATTCTCTAACCACTCTACAAGAAAAGATCCTTCTTCACCTCATTTTCTTGCTTCTGCTACCACCAATCATCATTCATACCTTGAATCTGCTTCTTCCCTTTCTCTTCACAACTTCGGTGCTGGTTCTGTTCCATCAAGTAGGGAGCCCAGGGGGTTGGATTGGATGCTGAATGGAGATCCTATTTCGCTTGGAACATCAGATTCAGAATGGAACACTCTGATGAACAACAACAAAGTTGGATTCAATGCTATGAGTTCCTGCAGCAACACTGAGCCTCAATATATGAACTCATTCCCAGTCTATAGCCCTGGATTGGATCAGCAACACAATAAGCGCTCTCCAACTTTCCTTAACCCTGTTCTGGTTCCTATGGAAACTCTCCAATCTGATAAACCAAGGGTTTTCATCGATGCTTGGTCGAACGCGGCAACGGATCAAGAAACTAATGATGCCGACAACAAGAACTCTGTTTCATCAATTGGGAAACTGTCCCTCTCTTCTCTTGATTTATCAATGGGAGGTGGATATATGCATGAAGAAGTGGGGTTAGGCCTAATGGAAGAGCCAGAGCCGGAAGAGAACAACACAAGCAATGGCACTAAATCTGGCTTCTCGAATTGGCCCACACCACCACCTTGGGTAGCTTCAACCACCACACCTGGTGGTCCACTAGCTGAAGTTCTAATGCCGAGTACAGTCACTTCCACCAATGATGGTGCCGCCGCCACTTCCAATTCGAATCTTTCGTCTCCGGCCACGACAATGGTGTCATCTCCATCTGGGGTATTGCACAAGACACTTGCTTCATTGTCTGATAGCAGTAGCAATAGCAGCCCAAGGGTTCCATCTTCAGGGGCAAATTCTGAAATTGCCTTGCTCAGGTTCAATCAGAAGTAG 1899 0.4476 MGEFGVSLKETKKNSVAAATSNSNVLGLGSVSNKVQVQQQQQHNNININNNYLEAFPSKTRMMMMMMMVHHNHHHHPFDSDSSASALGDDGDGDGPTLQHHLLTTNHNHSINNAAAANSGVNTVVVDDDDDGAAASVEETRQPLQQPFHFSHSPYYSPSSATTTTTTTTTTTRYPFKSPGTSGGMMAASLGRFPFTSAQWRELERQAMIYKYMMASIPVPPELLLMPIAAASRSSPLEGGGGGGGGFNLRLSSSNNNDAEPNRCRRTDGKKWRCSREVAPNHKYCERHMHRGRPRSRKPVELHNNNNNNGHNLLKRARHDSHPYAASSAAVTVAFSNHSTRKDPSSPHFLASATTNHHSYLESASSLSLHNFGAGSVPSSREPRGLDWMLNGDPISLGTSDSEWNTLMNNNKVGFNAMSSCSNTEPQYMNSFPVYSPGLDQQHNKRSPTFLNPVLVPMETLQSDKPRVFIDAWSNAATDQETNDADNKNSVSSIGKLSLSSLDLSMGGGYMHEEVGLGLMEEPEPEENNTSNGTKSGFSNWPTPPPWVASTTTPGGPLAEVLMPSTVTSTNDGAAATSNSNLSSPATTMVSSPSGVLHKTLASLSDSSSNSSPRVPSSGANSEIALLRFNQK* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2153 632 ProSiteProfiles WRC domain profile. 258 302 IPR014977 -
Amo20g2153 632 MobiDBLite consensus disorder prediction 75 101 - -
Amo20g2153 632 ProSiteProfiles QLQ domain profile. 194 229 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo20g2153 632 MobiDBLite consensus disorder prediction 525 546 - -
Amo20g2153 632 Pfam WRC 259 301 IPR014977 -
Amo20g2153 632 MobiDBLite consensus disorder prediction 569 632 - -
Amo20g2153 632 PANTHER - 157 621 IPR031137 GO:0005634|GO:0006351|GO:0032502
Amo20g2153 632 MobiDBLite consensus disorder prediction 148 180 - -
Amo20g2153 632 MobiDBLite consensus disorder prediction 237 266 - -
Amo20g2153 632 MobiDBLite consensus disorder prediction 522 557 - -
Amo20g2153 632 MobiDBLite consensus disorder prediction 148 178 - -
Amo20g2153 632 PANTHER GROWTH-REGULATING FACTOR 7 157 621 - -
Amo20g2153 632 Pfam QLQ 194 225 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo20g2153 632 SMART QLQ_2 193 230 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2153 Amo-Chr20 97379095 97382059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2153 460 610 GRF Transcription Factor Family AT5G53660 37.580 3.92e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Amo20g2153 WRC 5.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2153 - - adu:107469817 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1646 10 57969399 57972400 Amo20g2153 20 97379095 97382059 hybridization