Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2140 ATGGAACGTGACGGTGGCCATAAACAAACTTCTCACAAAACTCCGTACACTCAGCTTGAACAGGTTAGCTCTGATTTCTTTCTAGCAATTGGCCTGCAAGAGCAAAACGCAACAATATTCACAGCGCTCGCAGCGACACTGGAAAGCGAAGGATCCTCCTCGTCGCTTGATAATGAGCAGGAAGACGATGATAACGCTGATTTCTTCACGAGTTATCAGTTTGAAACGGAGGACCTTCAGTTTCTTGAAAGCGAAGGAAGCAACTACGGTGATGACGAAGGCATGGATGACTTTGACTTCGACGTGGACGAATTGACATATGAAGAGTTAATTGAGTTGGAAGACTTTATAGCGAAGCAGAAGAGAGGGTTATCAGCAAATGAGGTTTCTTCGTGCTTGCATTCCTACACCTTCGATTCTGTTAACGAGAGGAAAAGCAGTGGAACCGATCGGTGCGTGATTTGCCAGATTGAGTATGAAGAAGGTGAAGCGTTGGTGGCACTTCGTTGCGGACATCCTTTCCACACGGATTGCATAAGCAAGTGGCTTCAAGTAAATTTTATCCGACTCAAGTTAAGTGCTAAAATGATCTCTGATATTAGTGTGTGCATTAAAATTGTTTTTGAAATTTTAATTATATTAATTACATCTCTAAAATCGATAAAAGTTGCCATCACTCCATCACCACCGTTGACTACCAACCCTCCTTCGCCGCCATCGACATGCTTGTCTTTGTCAGCGTCAACCTCCACCTCGCCAACGAGCAAACACGTCCTCAAGTTCAGCCACCCACTCTCCACCATCCTCCCTTCGCCGCCGTGGTTCTCCTCCTCCTCTTCTTCCTCTTCTTCTTCCTCTTCTTCTTTCTCTTTTTTCAGATGTGATTCGCATTAA 894 0.4474 MERDGGHKQTSHKTPYTQLEQVSSDFFLAIGLQEQNATIFTALAATLESEGSSSSLDNEQEDDDNADFFTSYQFETEDLQFLESEGSNYGDDEGMDDFDFDVDELTYEELIELEDFIAKQKRGLSANEVSSCLHSYTFDSVNERKSSGTDRCVICQIEYEEGEALVALRCGHPFHTDCISKWLQVNFIRLKLSAKMISDISVCIKIVFEILIILITSLKSIKVAITPSPPLTTNPPSPPSTCLSLSASTSTSPTSKHVLKFSHPLSTILPSPPWFSSSSSSSSSSSSSFSFFRCDSH* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2140 297 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 188 - -
Amo20g2140 297 ProSiteProfiles Zinc finger RING-type profile. 152 203 IPR001841 -
Amo20g2140 297 Pfam Ring finger domain 151 184 IPR001841 -
Amo20g2140 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 188 IPR045191 GO:0061630
Amo20g2140 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 188 IPR013083 -
Amo20g2140 297 SUPERFAMILY RING/U-box 151 187 - -
Amo20g2140 297 MobiDBLite consensus disorder prediction 229 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2140 Amo-Chr20 96774370 96777507 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2140 99 188 C3H Transcription Factor Family AT3G63530 43.956 6.45e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2140 K19045 - gmx:100777284 189.889