Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2117 ATGGTTTTGCAGATTGACGAAGAGCTTCTTCAGGAAGTGGTTAATATGGGATTTGACAGAAATCAATTGGTTGAATCTTTATGCAACAGGATCCAAAATGAGTCACTAAGAAAAATGAACCACCCAAATATTGTGAAGCTAAAGGAAGTTATTCGAGAAAGTGACATTCTGTACTTTATTTTTGAGTACATGATGGTTTTCCAAGGTCTTGCTTATATGCACCAGCGGGGATACTTCCACCGTGATCTGAAGCCTGAGAACTTGCTGGTTACCAAGGATATCATAAAAATTGCTGATTTTGGCCTAGCACGTGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGGCGGTATCGTGCTCCTGAAGTGCTACTTCAATCTTATCTGTATAGCTCCAAAACAGCATCACTTGAAAAGCGTAGCCTATTCCCAAACGCCAAAAGCGTAGTCCTTGGTGCAGAAAAGCGTAGCCTTTGA 486 0.4177 MVLQIDEELLQEVVNMGFDRNQLVESLCNRIQNESLRKMNHPNIVKLKEVIRESDILYFIFEYMMVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREISSQPPYTEYVSTRRYRAPEVLLQSYLYSSKTASLEKRSLFPNAKSVVLGAEKRSL* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2117 161 Gene3D Phosphorylase Kinase; domain 1 13 64 - -
Amo20g2117 161 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 66 137 - -
Amo20g2117 161 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 4 27 IPR015940 -
Amo20g2117 161 Gene3D Transferase(Phosphotransferase) domain 1 66 135 - -
Amo20g2117 161 ProSiteProfiles Protein kinase domain profile. 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2117 161 Pfam Protein kinase domain 66 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2117 161 ProSitePatterns Serine/Threonine protein kinases active-site signature. 78 90 IPR008271 GO:0004672|GO:0006468
Amo20g2117 161 SMART serkin_6 7 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2117 161 Pfam UBA/TS-N domain 5 34 IPR015940 -
Amo20g2117 161 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 33 64 - -
Amo20g2117 161 CDD UBA_SnRK1_plant 5 34 - -
Amo20g2117 161 SUPERFAMILY Protein kinase-like (PK-like) 34 136 IPR011009 -
Amo20g2117 161 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 66 137 - -
Amo20g2117 161 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 33 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2117 Amo-Chr20 94382591 94384699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2117 36 135 Core Cell Cycle Gene Families AT3G48750 37.209 2.18e-19 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Amo20g2117 Pkinase 9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2117 K08829 - gmx:100810150 186.422