Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2114 GCAAACAAAGAAATTGGTGTGGGAATAAGAAAAACGGGTTACCAGTCAAAGCGTTATCTGAGAAACCCTAATCGTAAAAATCCGACCCCTATATATCGTAAAGTACGCAGAAACCCCAAAACTAACCGGGGTTTTGTGAGGGGGGAGAAAGAGAGAGGTAGAGAACAAAGAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTGGAGGTGGAATCTAGTGACACCATCGATAACGTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACACTCGCCGATTACAACATTCAAAAGGAGTCGACATTGCATCTTGTTTTGAGGCTTCGTGGTGGAATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATACAATCAGGATAAGATGATCTGCCGCAAGTGTTATGCACGTTTGCACCCTCGTGCTGTCAATTGCAGGAAAAAGAAGTGCGGGCACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGTAA 561 0.4706 ANKEIGVGIRKTGYQSKRYLRNPNRKNPTPIYRKVRRNPKTNRGFVRGEKERGREQRKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2114 186 CDD Ubl_ubiquitin 59 134 - -
Amo20g2114 186 Pfam Ribosomal L40e family 136 185 IPR001975 GO:0003735|GO:0005840|GO:0006412
Amo20g2114 186 SUPERFAMILY Ubiquitin-like 54 134 IPR029071 -
Amo20g2114 186 SUPERFAMILY Zn-binding ribosomal proteins 134 185 IPR011332 GO:0006412
Amo20g2114 186 Gene3D - 53 137 - -
Amo20g2114 186 Gene3D - 138 186 IPR038587 -
Amo20g2114 186 ProSiteProfiles Ubiquitin domain profile. 59 134 IPR000626 GO:0005515
Amo20g2114 186 PANTHER UBIQUITIN 59 183 - -
Amo20g2114 186 SMART ubq_7 59 130 IPR000626 GO:0005515
Amo20g2114 186 PANTHER UBIQUITIN-60S RIBOSOMAL PROTEIN L40 59 183 - -
Amo20g2114 186 Pfam Ubiquitin family 61 132 IPR000626 GO:0005515
Amo20g2114 186 ProSitePatterns Ubiquitin domain signature. 85 110 IPR019954 -
Amo20g2114 186 PRINTS Ubiquitin signature 69 89 IPR019956 -
Amo20g2114 186 PRINTS Ubiquitin signature 90 110 IPR019956 -
Amo20g2114 186 PRINTS Ubiquitin signature 111 132 IPR019956 -
Amo20g2114 186 SMART Ribosomal_L40e_3 135 186 IPR001975 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2114 Amo-Chr20 93863786 93865962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2114 59 186 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 6.67e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2114 K02927 - pavi:110749633 266.159