Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2112 ATGCGACGCAAGAGAGGAGGCTGTTCCGCCGTGCACTGTCGTCGCTCCTGGGGTCGATTGAAGCCGCCGCCGCAGCTAGGGCTTGCTGTGCTCCTAAGTTTGGACCTCTTCATATATGGGAACAATGCTGATCGATTCCTGAATTGGAGCACTAGGTTCCAAATTGTTCTAGGCGTGGCAAGGGGATTGCAGTACCTTCATGAGGATTCACATCTAAGAATTGTTCACCGAGACATCAAGGCAAGCAACATTCTTCTTGATCATAAGTTTCATCCCAAGATTGGAGACTTTGGCCTTGCCAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGCACACAATTCGCTGGAACATTCGCCAAAAGGGCTGTTTTCGCCGGAGCCAGAACATTATCGAGGACCAAAGCTGAAAGTTGCCATCATTGGAGCTGGGCTTTCTGGCATGTCAACTACACTGGAACTCTTGGATCAAGGACACGAGTCCCAGAAGAATACACAGGTGTTGTAGAAGCTGATTTTCTGACTTCAAGTGTAGTTTATGGCGTCCTCAAGAGAAATTTGGGTATGCTCGTGAACTATCTTTCAACATCCAATAAGACTTTATCTTGGTATGAGCAAAATTTGGTGGCTCACCCAGCACCACCAGCGTCTGCTGTCTTTGCCTGCTGTTTCACAAATTCCTTTTCTTCGATTTTGCCTGCTACTATTCTGTCCTGTGCTATCCGGGGCTGTTATTTCCAACAAGGTATGGAAGTTAAGATGGAAATGAAGGTGGAAGATGCATATAGGAAGTCAATGGAGACTGTGTTGAATTGGATACAAGATACTGTAAATCTTAACAAGAGTCAAGTTTTCTTTCGTACATATGCACCCGTGCACTTCAGAAGTGGAGATTGGAGAAGCGGTGGAAGTTGTCATTTGGAAACACTGCCAGAGCTTAACATGTCATTAGTGCCTAATGATAACTGGTCACAATTCAAAATAGGCAATTCATTGCTATCATCACACAAAAACAGCACTGAACTTGTCAAGTTAAAAATATTGAATATAACAGAGATGACAGCTCAGAGAAAAGATGGACACTCATCAATCTACTATCTTGGTCCGAATGGCGGCACGGCGGCACTCCATCAGCAAGATTGCAGCCACTGGTGTCTGCCTGTAGCGTTGAAAAGCGTAGCCTATTCTAGAAAAATGAAAGCTGAAAAGCGTAGCCTTTGGTCCTGGACAGCATCACTTGAAAAGCGTAGCCTATTCCCAAACGCCAAAAGCGTAGCCCTTGGTGCAGAAAAGCGTAGCCTTTGA 1302 0.4531 MRRKRGGCSAVHCRRSWGRLKPPPQLGLAVLLSLDLFIYGNNADRFLNWSTRFQIVLGVARGLQYLHEDSHLRIVHRDIKASNILLDHKFHPKIGDFGLARFFPEDQAYLSTQFAGTFAKRAVFAGARTLSRTKAESCHHWSWAFWHVNYTGTLGSRTRVPEEYTGVVEADFLTSSVVYGVLKRNLGMLVNYLSTSNKTLSWYEQNLVAHPAPPASAVFACCFTNSFSSILPATILSCAIRGCYFQQGMEVKMEMKVEDAYRKSMETVLNWIQDTVNLNKSQVFFRTYAPVHFRSGDWRSGGSCHLETLPELNMSLVPNDNWSQFKIGNSLLSSHKNSTELVKLKILNITEMTAQRKDGHSSIYYLGPNGGTAALHQQDCSHWCLPVALKSVAYSRKMKAEKRSLWSWTASLEKRSLFPNAKSVALGAEKRSL* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2112 433 SUPERFAMILY Protein kinase-like (PK-like) 34 118 IPR011009 -
Amo20g2112 433 Gene3D Transferase(Phosphotransferase) domain 1 33 137 - -
Amo20g2112 433 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 241 386 IPR026057 GO:0016740
Amo20g2112 433 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2112 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Amo20g2112 433 Pfam Protein kinase domain 54 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2112 433 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 241 386 IPR029962 GO:0016413
Amo20g2112 433 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 10 241 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2112 Amo-Chr20 93058891 93063279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2112 47 118 Receptor kinase-like Gene Family AT1G70530 63.889 2.79e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo20g2112 PC-Esterase 6.4e-36 CL0264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2112 - - aip:107647562 701.434