Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2080 ATGGCAAACCACACTATTATATTGAAAAAGACTACAATTCTACCATTTTTAACTTGCAAGATTTGTGATGAATTGCTGGAGGATGCTACTGCTATTAAGTGCATCCATCACAAAATTATTGAAGAGGAATTAGAACATTGTCCAGTGTGCGATCTAAATTTGGGACCTAAACCTCTCGAGAAATTGAGGCATGACGAAAGTATGCAATCAATAGGGAACACAATATTTCCTCCAAGAAAAAGAAATATTGTTAATAAAGTAGATGATGATGTTGCCAATGCTGAGAAGAATGAGTTATTAGGTGACCTTGGCAGAATTTTGTTTGAAGATCCTGAGAATGAAAAAGATGTGGCGTTAAAAGATTTGCCATATACTTCAAAAGAACATGTAGAGAATATCAAAGAGAGTTTGCTACCTTCTGAAAAGAGTCATTGCATGCAAAACAAAAATGTTAAGGGTAAAAGTATTTGTCCTGATAATGTGGAAGGATACAATACTGATGAACTTGATCAAATGGAAGATAATAACAATGGCTCTCAAGTGAAAAAATCTATACAAAAGAAAAAGAAGCACAAGAAAAAAACAAAAAACATCGCTGAAATTTACCAAAAACATGAAACAATTATTATTTCTAGAGAATCAACTGAATATTTACCTTTAGCTCTGGAAGATTTTGATCAAGTTAACATTTTAAGGGATAATTCTTCATTTTGGATCTGCTTAGAAGCTTCAGAAAAACAGAAAGGAGATATGCCACCTTTGCCTCAAATCAGTGAAAAATATATAAGAATAGAGGATGGAAGCTTACCTGTTTCGTATATGCAAAACTATATAACCAAGAAACTAAACCTAAAAAATGATGATGAGGTTGAGATCACATGTTTGGGACACCAAATATCCACTAAAATGGAATTGAAAAAATTGGCTAAGTTGTGGTTTAACATGTCATTCAAAGGAAAGTCAAAGACAAAGCCATCACCAAATGATTATATTGCAATCATAGGCTATGGTCGTGGTGTCTCACAATCATGA 1032 0.3314 MANHTIILKKTTILPFLTCKICDELLEDATAIKCIHHKIIEEELEHCPVCDLNLGPKPLEKLRHDESMQSIGNTIFPPRKRNIVNKVDDDVANAEKNELLGDLGRILFEDPENEKDVALKDLPYTSKEHVENIKESLLPSEKSHCMQNKNVKGKSICPDNVEGYNTDELDQMEDNNNGSQVKKSIQKKKKHKKKTKNIAEIYQKHETIIISRESTEYLPLALEDFDQVNILRDNSSFWICLEASEKQKGDMPPLPQISEKYIRIEDGSLPVSYMQNYITKKLNLKNDDEVEITCLGHQISTKMELKKLAKLWFNMSFKGKSKTKPSPNDYIAIIGYGRGVSQS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2080 343 SUPERFAMILY RING/U-box 14 55 - -
Amo20g2080 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 100 IPR013083 -
Amo20g2080 343 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 8 338 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2080 Amo-Chr20 87617269 87626283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2080 8 81 C3H Transcription Factor Family AT2G30580 44.578 1.64e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2080 K16277 - ahf:114925965 425.246