Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2076 ATGGCTGAGCTGCAGAAGCAACAGCCTTCCTCAAAGGAAGCTCACAGCACCAAGGCTCTCGTCGGCGCACTCAACATCCTCTCCCGCAACCTCCCTCTCCCTCCCGATCTCTTCAACACCGTTTCTTCCATCTCTCTCAACTCCTCCGCTGAAGATGGTTTGCTGGCGGATCTCGATGATGCGCTTTCGAAGCAGCGATCCAACTGTGCTTCGGGTTTCAAATTGTGCAGAGCTAGAGAAAGCCGTTATCAAAGCCTCACTCAGCATCGCTTAACTCAGCTTGAAGGATTGCCTTCAAGCAGGGGAGGAGACGACCTACAGACAAGATCCCTACTTGAATATTACGGATTGAAGCTAGCAGAGTTGCAGAGGATGGTTCGATGTGATGTCAGCTCTGAATACTGGCTCAATGTTATGTGTGCATATCCTGAGAGGCAGTTGTTTGATTGGGGCATGATGCGGTTGCATCGTCCAATGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATAAATTAAGAAAGAAACGTGATGCTGAGAGACTATCAAGATTAGAAGAGCAGGCCAAAAATCATTTAGAGACCAGAAAAAGAAGATTTTTCACAGAAATACTGAATACTGTACGTGAGTTCCAATTGCAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGGCAACGTGCAACACGGGCGGAGAAATTGAGATTCCAAGCCTTAAAAGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAAAATGAAAGATTGACTGTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGGGCAGCTGTTCAACGTCAAAAGGACTCAAAACAATCAGATGGTATTGAACCCTTGGAAGATTCAGAAGCTGACTTCCCAGAGTCAGATGCTTCAAAAAATGGAATTTCTAAGGAATCACCACTTGAGGAAGATGCAGATTTGATAGATTCTGATCAAAATGGTGAGTCTAGTGATTTACTTGAAGGGCAGCGGCAATACAATTCGGCCATACATTCAATTCAAGAAAAGGTGACGGAGCAACCATCTATACTTCAAGGTGGAGAGTTAAGGCCATACCAGCTAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATACAAACCATTTCATTGGTAGCATATCTTATGGAGCACAAGGGTGTGACTGGTCCTCACTTGATTGTGGCCCCAAAGGCTGTTCTGCCTAATTGGATGAGTGAATTCTCAACATGGGCCCCTAGCGTTATAACTATTCTTTATGATGGACGAATGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCTGGAGATGGGAAATTTAATGTTCTGCTAACACATTATGATCTTATAATGAGAGATAAAGCCTTTCTTAAGAAAATCCACTGGAACTACTTGATTGTGGATGAAGGGCATCGGTTAAAGAATCATGAGTGTGCTCTTGCAAGAACCCTAGACTCTGGCTACCACATCCAACGTAGACTTTTGTTGACTGGTACCCCAATTCAAAACAGTTTGCAGGAATTATGGTCCCTGCTAAATTTTCTCCTTCCAAGCATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGTTATTGATCATTAGGCGTCTACATCAAGTAATAAGGCCCTTTATATTAAGAAGGAAAAAGGATGAGGTGGAAAAATATCTTCCTGGAAAATCTCAGGTCATACTCAAATGTGACATGTCAGCTTGGCAGAAAGTATATTATCAACAAGTAACAGATGTAGGAAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAGAAGTCTACAGAACTTGACGATGCAACTCAGAAAGTGCTGTAACCATCCCTACCTCTTTGTGGGAGACTACCATATGTACAACCGGAAGGAGGAAATTGTCAGAGCATCAGGGAAGTTTGAACTTCTTGATCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCTTACTGTTTTCACAGATGACTCGTCTCATGGACATTCTTGAAATTTATCTGCGACTTCATGATTTTAAGTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCTCTATTACGGGAATTCAACGCTCCTGACTCTCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACCTACAATCAGCAGATACTGTTATAATATTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGACCGAGCCCATCGCATTGGACAAAAAAAGGAAGTCAGAGTATTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTTATCCAAGCAGGACTTTTCAATACAACTTCAACAGCTCAGGACAGAAGAGAAATGTTAGAGGAGATTATGCGAAGAGGTACAAGCTCACTTGGGACAGATGTACCGAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCCGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGGAGACAAAGGGAGAATTATAGATCTCGTCTCATGGAAGAGCATGAAGTTCCAGATTGGGTATACTCTGCTCTAAATAAGGATGATAAGGCCAAATCTTTTGATGTTGGTAGTGTTACCGGAAAGCGGAAAAGAAAAGAAGTCGTGTATGCAGACACATTAAGTGATCTGCAGTGGATGAGGGCTATGGAGAATGGACAAGATGTATCTAAGCTTTCAGCTAAAGGGAAGAAAAGAGGCATCCTCCTTTCTGACAACCATGCACAAGCCAGCAATAAAACAGTGGCCGATGAAAGGTTGTTAGAGCAAAGGAGTGGAAGTGTCCTCAAGATGAAGATTGAAAGATCAAGTGCAGATGATTTCATTGTGACTCCTGCTTCTAAGCGGCTGAAAACTGAAGAACCAAGTTCCCAGAAACATGGAAGTGAGAGTGGTGTGGACGAGAATAAGTTTTCCTGGAATATTCACAGGAAGAAGAGAACAAGCTATCCCGGCCAGGGTTCATCATCTGATACCAGAGACCAGAATGCCAATGACAGAGCAAATAGGAACTGA 3237 0.4269 MAELQKQQPSSKEAHSTKALVGALNILSRNLPLPPDLFNTVSSISLNSSAEDGLLADLDDALSKQRSNCASGFKLCRARESRYQSLTQHRLTQLEGLPSSRGGDDLQTRSLLEYYGLKLAELQRMVRCDVSSEYWLNVMCAYPERQLFDWGMMRLHRPMYGVGDPFAMDADDKLRKKRDAERLSRLEEQAKNHLETRKRRFFTEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTVLLEETNKLLVNLGAAVQRQKDSKQSDGIEPLEDSEADFPESDASKNGISKESPLEEDADLIDSDQNGESSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLVAYLMEHKGVTGPHLIVAPKAVLPNWMSEFSTWAPSVITILYDGRMDERKAMKEELSGDGKFNVLLTHYDLIMRDKAFLKKIHWNYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSRSLQNLTMQLRKCCNHPYLFVGDYHMYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLREFNAPDSPYFMFLLSTRAGGLGLNLQSADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQRENYRSRLMEEHEVPDWVYSALNKDDKAKSFDVGSVTGKRKRKEVVYADTLSDLQWMRAMENGQDVSKLSAKGKKRGILLSDNHAQASNKTVADERLLEQRSGSVLKMKIERSSADDFIVTPASKRLKTEEPSSQKHGSESGVDENKFSWNIHRKKRTSYPGQGSSSDTRDQNANDRANRN* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2076 1078 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 554 IPR014001 -
Amo20g2076 1078 SMART helicmild6 716 800 IPR001650 -
Amo20g2076 1078 SMART ultradead3 372 565 IPR014001 -
Amo20g2076 1078 MobiDBLite consensus disorder prediction 1053 1069 - -
Amo20g2076 1078 SMART SnAC_2 893 954 IPR029295 GO:0042393
Amo20g2076 1078 MobiDBLite consensus disorder prediction 1018 1078 - -
Amo20g2076 1078 Pfam SNF2-related domain 379 667 IPR000330 GO:0005524|GO:0140658
Amo20g2076 1078 Coils Coil 891 911 - -
Amo20g2076 1078 MobiDBLite consensus disorder prediction 293 348 - -
Amo20g2076 1078 PANTHER SNF2/RAD54 HELICASE FAMILY 38 1025 - -
Amo20g2076 1078 PANTHER ATP-DEPENDENT HELICASE BRM 38 1025 - -
Amo20g2076 1078 CDD SF2_C_SNF 678 811 - -
Amo20g2076 1078 MobiDBLite consensus disorder prediction 1026 1049 - -
Amo20g2076 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 601 IPR027417 -
Amo20g2076 1078 Coils Coil 176 196 - -
Amo20g2076 1078 Gene3D - 607 906 IPR027417 -
Amo20g2076 1078 Pfam Snf2-ATP coupling, chromatin remodelling complex 893 954 IPR029295 GO:0042393
Amo20g2076 1078 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 857 IPR001650 -
Amo20g2076 1078 Gene3D - 345 600 IPR038718 -
Amo20g2076 1078 Pfam Helicase conserved C-terminal domain 687 800 IPR001650 -
Amo20g2076 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 854 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2076 Amo-Chr20 87290080 87295897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2076 683 828 RAD5 or RAD16-like Gene Family AT5G43530 38.667 3.19e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo20g2076 SNF2_N 1e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2076 - - gmx:100775993 1757.27