Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2065 ATGGCAGCTAGCATAAGGTGTGGAAGCTCAAAGTACGTGTCATTAGACTTTGGACCGTTTCTCACTGCAAATTCTGGGATGAAGGTACCTATTGAGATAGTTGTCCTTGATGAAGAGGGGGATAAAATTCAATGCTCTATTAAAGGCATATTTGTTCCTATCTTCGAGGGCCTACTCGCTGAGGGCAACGTGTACGTGGTCACTAATTTTGCAGTTGATTTGAATACCATCAAGTTCAAGTCTACTAGACACGAATTTAGAATCAACTTCAAGAGGGACACGATTGTGCGTTCGGTACAAGATTCTTCAGTTCCATTGAACGGATTCAATTTTGTTCAATTCAAAAAAATTCATGCAGGGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCCTCTAAGGGTAACTTGGTCGAGTTCACACGGGACGGGAAGCCGTCAAGTTATATCACCATAGAAGTTGATGATCTTGAGGTGAACAAATTGGATCCTGTTGACGGACAAAACATAATGCCGTTGGTCTATGATCAACCTGTTTCCATTGAGGAAGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCGGAGATAAAGGATCATAATAAGGATGCTGTATTTGTTACTTCCGGAACGATTAAGAAAGTTGAGACTGAGTTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTAAGGGAACTTGAGAAAAGATATTTTTGTCCCAATTGCGTTGAAGACTATGGGTTTTATGTGCTAGGGTACAGTATCCACGTAAGGGTGATAGACCACACCGACGCTGCCTCTTCTATTTTGTTCGATGGAAAAGCTGCAAAGTTTCTTGGAGTTTCTGCCAATGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTTCTCTCCCGCAGAGATTAATAAGTTTAGGGATATTAAGTCCATCTTCAAAGTGCAACTCAAGATGAGGAATATGAACTCTTATGAGCCATATATGATTCATGTGCTGAGAATGACTAATGAGAATTCTTTGGACCTTTTGTTGCACGAAAATTTTGAACTACTGAGCTTGTCTACTGGTCCATACGACACTTCTAAGGATTGTGAAAGTGAGTCAACTCCATCACCTGCAATTAATGAGAAACATAATTCTAAGATTGTCGGAGCTAAGAAACATATGGAAGAGGTTGGAGAGGAGTCAGTTTCATCCAAATCTAAGAAAGGAAAGTGGGTTGCGATGAAGGACTAA 1260 0.4048 MAASIRCGSSKYVSLDFGPFLTANSGMKVPIEIVVLDEEGDKIQCSIKGIFVPIFEGLLAEGNVYVVTNFAVDLNTIKFKSTRHEFRINFKRDTIVRSVQDSSVPLNGFNFVQFKKIHAGSKEDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIEVDDLEVNKLDPVDGQNIMPLVYDQPVSIEEDFLRLSVYKTIAEIKDHNKDAVFVTSGTIKKVETEFGWWYKGCKKCRRGLRELEKRYFCPNCVEDYGFYVLGYSIHVRVIDHTDAASSILFDGKAAKFLGVSANDLRQSCVTKGVEKNFSPAEINKFRDIKSIFKVQLKMRNMNSYEPYMIHVLRMTNENSLDLLLHENFELLSLSTGPYDTSKDCESESTPSPAINEKHNSKIVGAKKHMEEVGEESVSSKSKKGKWVAMKD* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2065 419 PANTHER REPLICATION FACTOR A 1, RFA1 207 364 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo20g2065 419 PANTHER BNAC01G35430D PROTEIN 29 139 - -
Amo20g2065 419 MobiDBLite consensus disorder prediction 366 419 - -
Amo20g2065 419 Gene3D - 189 351 IPR012340 -
Amo20g2065 419 SUPERFAMILY Nucleic acid-binding proteins 194 346 IPR012340 -
Amo20g2065 419 CDD RPA1_DBD_A_like 31 96 - -
Amo20g2065 419 Gene3D - 103 171 IPR012340 -
Amo20g2065 419 MobiDBLite consensus disorder prediction 388 419 - -
Amo20g2065 419 CDD RPA1_DBD_C 197 330 IPR013955 -
Amo20g2065 419 PANTHER BNAC01G35430D PROTEIN 207 364 - -
Amo20g2065 419 Pfam Replication factor-A C terminal domain 209 335 IPR013955 -
Amo20g2065 419 Pfam Domain of unknown function DUF223 32 119 IPR003871 -
Amo20g2065 419 MobiDBLite consensus disorder prediction 366 384 - -
Amo20g2065 419 SUPERFAMILY Nucleic acid-binding proteins 23 101 IPR012340 -
Amo20g2065 419 Gene3D - 16 102 IPR012340 -
Amo20g2065 419 PANTHER REPLICATION FACTOR A 1, RFA1 29 139 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2065 Amo-Chr20 87007324 87010752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2065 205 294 Core DNA Replication Machinery Family AT5G61000 30.769 3.28e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2065 - - adu:107477146 416.387