LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo20g2048	ATGATTGATTTACCCATTCAAAGCAATTTATGCGAGGGACTCTCTTTAACAGAATATATAATTTCTTGTTACGATATTGGGGATATCCTTTATGGCCGCTTCTCTATGGTACCAGTTGTTGCTTCATTAATAGGATCACGATTCGACTTTGATCGTTATGGACTGGTACCGCGATCTAGTCCTAGGCAGGCAGACCTTATTTTAACAGCGGGCACAGTAACTATGAAAATGGCTCCTTCTTTAGTTAGATTATATGAGCAAATGCCCGAACCAAAATATGAAAGAGGTAATCGACGATATGCTTCTATTGGTGACATTGTTGTTGCTGTAATCAAGAAAGCGGTACCAAATATGTCTTTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGCATGATAATACAGTATGATGATAATGCCGCGGTTGTCATTGATCAAGAGTGA	477	0.3816	MIDLPIQSNLCEGLSLTEYIISCYDIGDILYGRFSMVPVVASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYERGNRRYASIGDIVVAVIKKAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIDQE*	159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo20g2048	158	Pfam	Ribosomal protein L14p/L23e	95	157	IPR000218	GO:0003735\|GO:0005840\|GO:0006412
	Amo20g2048	158	PANTHER	50S RIBOSOMAL PROTEIN L14, CHLOROPLASTIC	97	158	-	-
	Amo20g2048	158	SMART	Ribosomal_L14_2	96	156	IPR000218	GO:0003735\|GO:0005840\|GO:0006412
	Amo20g2048	158	Gene3D	-	35	90	-	-
	Amo20g2048	158	ProSitePatterns	Ribosomal protein L14 signature.	128	154	IPR019972	-
	Amo20g2048	158	Gene3D	Ribosomal protein L14	91	158	IPR036853	GO:0003735\|GO:0005840\|GO:0006412
	Amo20g2048	158	PANTHER	50S/60S RIBOSOMAL PROTEIN L14/L23	97	158	IPR000218	GO:0003735\|GO:0005840\|GO:0006412
	Amo20g2048	158	SUPERFAMILY	HydA/Nqo6-like	42	93	-	-
	Amo20g2048	158	SUPERFAMILY	Ribosomal protein L14	94	157	IPR036853	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo20g2048	Amo-Chr20	85849731	85850681	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo20g2048	101	158	Cytoplasmic Ribosomal Protein Gene Family	AT1G04480	37.931	6.54e-08	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo20g2048	-		-	csin:14412462	112.464