Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2006 ATGGCTCAAGCAACGAACGGTGGGGATCTGAATCAGAATGGACAGCAGCAGAGTCAGCAGCAGTGGGCGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAGTATCCAGCAACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCGTATGTTCATCCTCACCATTACCAGCCTCCGCCGCCGCCGCCGACCGCTCACCACCACCACCAGCATCATTTCAAGCAGCAGCAGACTCCGCCGCCGTCGTCTCAACCGCCGCAGCAGCACCACAACAACCACCATGGCCAGCAGAAGCAGCAATCTGGCTCCAACGGCGAAGAGATCAGGACGATCTGGCTCGGCGACCTTCACCATTGGATGGACGAGAACTACCTCGTCAATTGCTTTGCTCACACCGGCGAGGTTTTATCAGCCAAGGTCATACGAAATAAGCAGACAGGTCAGTCAGAGGGATATGGATTCGTGGAGTTTTATTCACGAGCAACAGCTGAGAAAGTTTTGCAGAACTATAATGGTACAATGATGCCAAATACAGATCAGGCATTCCGGCTGAATTGGGCTACATTCAGTACAGGCGATAGGCGATCTGATGCTGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCTATAGATGTTACTGATGCTATGCTGCAAGAGACTTTTTCTAGTAGATATTCATCCATTAAGGGAGCAAAAGTTGTAATTGATTCTAATACTGGCCGTTCCAAAGGTTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGGGCAATGACTGAAATGAATGGCATTTATTGTTCAAGTAGGCCTATGAGAATAGGTGTTGCAACACCCAAGAAAACTTATGGCTATCAGCAACAATATTCTTCACAAGCCGTAGTGTTGGCTGGTGGACACCCATCTAATGGTGTTGTGGCCCAAGGTTCCCAGGCTGAAGGAGATCTTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGATATCGGTGATGATGACCTCAGACAACCCTTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAGATTCCAGTGGGTAAAGGGTGTGGTTTTGTTCAATTCGCTGACAGAAAAAATGCCGAGGAAGCCATTCAGGCATTGAATGGGACTGTAATTGGGAAACAGACAGTGCGTCTTTCATGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAGCTGATTCCAATGGAAACCATTATGGTGGTCAAGGTTATGGGAATCATGGATTTGCTGTGAAACAGAATCAGGATATAGCAGTGCAGCCTGCTACTGCAATTCAAGGGGCTTCATAA 1347 0.4788 MAQATNGGDLNQNGQQQSQQQWAQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQPPPPPPTAHHHHQHHFKQQQTPPPSSQPPQQHHNNHHGQQKQQSGSNGEEIRTIWLGDLHHWMDENYLVNCFAHTGEVLSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSTGDRRSDAATSDLSIFVGDLAIDVTDAMLQETFSSRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHPSNGVVAQGSQAEGDLNNTTIFVGGLDSDIGDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRADSNGNHYGGQGYGNHGFAVKQNQDIAVQPATAIQGAS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2006 448 SUPERFAMILY RNA-binding domain, RBD 210 307 IPR035979 GO:0003676
Amo20g2006 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 198 IPR000504 GO:0003723
Amo20g2006 448 CDD RRM2_SECp43_like 211 290 - -
Amo20g2006 448 CDD RRM3_NGR1_NAM8_like 330 401 - -
Amo20g2006 448 SMART rrm1_1 119 194 IPR000504 GO:0003723
Amo20g2006 448 SMART rrm1_1 332 399 IPR000504 GO:0003723
Amo20g2006 448 SMART rrm1_1 213 287 IPR000504 GO:0003723
Amo20g2006 448 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 447 - -
Amo20g2006 448 MobiDBLite consensus disorder prediction 1 23 - -
Amo20g2006 448 Gene3D - 204 310 IPR012677 -
Amo20g2006 448 Gene3D - 315 434 IPR012677 -
Amo20g2006 448 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 19 447 - -
Amo20g2006 448 MobiDBLite consensus disorder prediction 63 114 - -
Amo20g2006 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 291 IPR000504 GO:0003723
Amo20g2006 448 SUPERFAMILY RNA-binding domain, RBD 81 200 IPR035979 GO:0003676
Amo20g2006 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 284 IPR000504 GO:0003723
Amo20g2006 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 333 396 IPR000504 GO:0003723
Amo20g2006 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 187 IPR000504 GO:0003723
Amo20g2006 448 MobiDBLite consensus disorder prediction 96 114 - -
Amo20g2006 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 331 403 IPR000504 GO:0003723
Amo20g2006 448 SUPERFAMILY RNA-binding domain, RBD 322 427 IPR035979 GO:0003676
Amo20g2006 448 CDD RRM1_SECp43_like 119 199 - -
Amo20g2006 448 Gene3D - 72 203 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2006 Amo-Chr20 79305264 79309560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2006 119 396 Eukaryotic Initiation Factors Gene Family AT2G36660 24.382 1.98e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2006 - - gmx:100814564 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2006 20 79305264 79309560 Amo20g2006 20 79305264 79309560 ECH