Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2005 ATGTCTTCTTTCTCACTCGGCGCCCATCCTCCGTCGGATTCTTCCTGCTCGCGGTCGTCTTGTCGCCATCGTCTCGGCATCATTGTCTCGAAGATTACACAGAAAAAAATCAATTACTTGGAACACTTGCACACAAACATGCCCAGTCCTAACAGCAGCTTGCCAATGGATCCTTCATTGGGTCCTTCCCCTGTTCTTAGAACCTTGGTTGTAATCATGTGTATCAATGCTGGTCCAGCGCATAAGGTGTGGAAGCTCAAAGTACGTATCATTAGGCTTTGGACCGTTTCTCAATTTGCAAAATTTGGGATGAAGGCACCTATTGAGATGGTTATCCTTGATGAAGAGGGGGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATCTTCGAGAGCTTACTCGCTGAGGGCAACGTGTACGTGGTTACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGAATCCACTTCAAGAGGACACGATTGTGCGTCCGGTACAAGATTCTTCATTTCCATAGAACGGATTCAATTTTGTTCTGTTCAAAACAATTCAATCAGAGTCTAGAGATGATGCTTGCCTCAAAGGGTAACTTGGTCGAATTCACCCGGGACGGGAAGCCGTCAAGTTATATCACCATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAGGGTAACGTTGTGGCAGTCTTTTGCTTTTCATTTGCTCAAATATCTGGAGGAACACCCGTGTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTATAGTGGGGTCATGGGTGTTTCCAACACAAACTACAATTCAAAACTGTTTATCAATGTTGAGTTTTCAGCTGCCAGGAATTTCTTTACGAGGGTGAACAAATTGGATCCTGTTGACAGACAAGGCATAATGCCGCTGGTCTATGATCAACCTATTTCAGTTGAGGAAGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCCGAGATAAAGGAGCATAATCAGGATACTGTATTTGTTACAGCCGGAACGATTAAAGAAGTTGACACCGAGTTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTAAGGGAACTTGAGAAAAGATATTTCTGTCCCAATTGCATTAGAGACTACGGGTTCTATGATCCAAGGTACGACATCCACATAAGGGTGATAGACCACACCGATGCTGCCTCTTTTGTTTTGTTCGATGGAGAAGCTGCAAAGTTTCTTGGAGTTTCTGCTAATGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTAATAAGCTTAGGGATATTAAGTTCATCTTCAAAGTACAACTCAAGATGAGGAATCTGAACTCTTATGAACCATATGTGATTCATGTGCTGAGAATGACTAATGAGAATTCTCTGGTCTCTGCTTTCCTGGATAAATACAATCATGACCTTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCATACGACACTTCTAAGGCTTGTGAGAGTGAGCTAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCGGAGCTAAGAAACATATTGAAGAAGTTGGAGAGGAGTCAGTTTCATCCAAATCCAAGAAAGGAAAGTGGGTTGTGATGGAGGACTAA 1713 0.4197 MSSFSLGAHPPSDSSCSRSSCRHRLGIIVSKITQKKINYLEHLHTNMPSPNSSLPMDPSLGPSPVLRTLVVIMCINAGPAHKVWKLKVRIIRLWTVSQFAKFGMKAPIEMVILDEEGDTIQCTVKDIFVPIFESLLAEGNVYVVTNFGVALNTIKFKPTRHEFRIHFKRTRLCVRYKILHFHRTDSILFCSKQFNQSLEMMLASKGNLVEFTRDGKPSSYITIELDDLEGGQKLRVTLWQSFAFHLLKYLEEHPCLTYVVILQMGKMKFYSGVMGVSNTNYNSKLFINVEFSAARNFFTRVNKLDPVDRQGIMPLVYDQPISVEEDFLRLSVYKTIAEIKEHNQDTVFVTAGTIKEVDTEFGWWYKGCKKCRRGLRELEKRYFCPNCIRDYGFYDPRYDIHIRVIDHTDAASFVLFDGEAAKFLGVSANDLRQSCVTKGVEKNSCPEEINKLRDIKFIFKVQLKMRNLNSYEPYVIHVLRMTNENSLVSAFLDKYNHDLGLLSHENSELLSLSTGPYDTSKACESELTPSPAVDEKHNSKILGAKKHIEEVGEESVSSKSKKGKWVVMED* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2005 570 SUPERFAMILY Nucleic acid-binding proteins 196 301 IPR012340 -
Amo20g2005 570 SUPERFAMILY Nucleic acid-binding proteins 333 483 IPR012340 -
Amo20g2005 570 Gene3D - 180 305 IPR012340 -
Amo20g2005 570 Gene3D - 328 494 IPR012340 -
Amo20g2005 570 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 74 431 - -
Amo20g2005 570 Pfam Replication factor-A C terminal domain 348 471 IPR013955 -
Amo20g2005 570 Pfam Domain of unknown function DUF223 109 168 IPR003871 -
Amo20g2005 570 CDD RPA1_DBD_C 336 469 IPR013955 -
Amo20g2005 570 PANTHER REPLICATION FACTOR A 1, RFA1 74 431 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo20g2005 570 SUPERFAMILY Nucleic acid-binding proteins 80 168 IPR012340 -
Amo20g2005 570 CDD RPA1_DBD_A_like 85 169 - -
Amo20g2005 570 Gene3D - 73 175 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2005 Amo-Chr20 79258633 79264749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2005 72 431 Core DNA Replication Machinery Family AT4G19130 21.173 2.09e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2005 - - adu:107477146 852.818