Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1997 ATGGATAAATCTGAGCAGACTCAGCAGCAGCAGCAGCAACAACAACAACAACAACAGCATGTGATAGGTGTTGCAGCAAGTGCTAGCCAAATGGCTTATTCTTCTCACTACCCGACTGCTCCTATGATGGCATCTGGTACACCTGCTGTAGTTGTGCCTTCACCYACGCAGTCTCCAACCGCTTTTTCCAATTCCCCMCACCAYCTTGCATACCAGCAAGCGCAACACTTCCATCACCAGCAACAGCAGCAACAGCAGCAGCAGCTTCAACTYTTCTGGGCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAGAACCACAGCCTCCCCCTTGCTCGCATTAAAAAGATCATGAAAGCCGATGAAGATGTCCGGATGATTTCAGCAGAAGCRCCAGTAATATTTGCAAAAGCATGTGAAATGTTCATRCTGGAGTTGACTTTGCGATCTTGGATCCACACCGAAGAGAACAAGAGGAGAACTCTGCAAAAGAATGATATAGCAGCTGCTATTTCGAGAAATGATGTTTTTGATTTCTTGGTTGATATCATTCCAAGAGATGAGTTGAAAGAGGAGGGACTCGGAATAGCAAAGGCTACTATTCCAATAGTGGGTTCTCCGGCTGATATGCCATATTATTATGTCTCTCCGCAGCACCCTGTAGGGCCTCCAGGGATGATAATGGGAAAGCCAGTTGATCAAGCAGCACTGTATTCRACACAGCAGCCTCGAGCTCCYATGGCMTTCATGCCATGGCCGCAGGCGCCCTCGCAACAGCAGCCACCCCAACAGGAACAAACAGACTCTTGA 816 0.4681 MDKSEQTQQQQQQQQQQQQHVIGVAASASQMAYSSHYPTAPMMASGTPAVVVPSPTQSPTAFSNSPHHLAYQQAQHFHHQQQQQQQQQLQLFWANQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFXLELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGIAKATIPIVGSPADMPYYYVSPQHPVGPPGMIMGKPVDQAALYSTQQPRAPMAFMPWPQAPSQQQPPQQEQTDS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1997 271 Pfam Core histone H2A/H2B/H3/H4 69 173 IPR007125 GO:0003677
Amo20g1997 271 MobiDBLite consensus disorder prediction 50 65 - -
Amo20g1997 271 MobiDBLite consensus disorder prediction 248 271 - -
Amo20g1997 271 Coils Coil 265 271 - -
Amo20g1997 271 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 13 265 - -
Amo20g1997 271 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 13 265 - -
Amo20g1997 271 MobiDBLite consensus disorder prediction 38 65 - -
Amo20g1997 271 SUPERFAMILY Histone-fold 67 182 IPR009072 GO:0046982
Amo20g1997 271 MobiDBLite consensus disorder prediction 1 21 - -
Amo20g1997 271 Gene3D Histone, subunit A 71 188 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1997 Amo-Chr20 78543984 78547075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1997 89 217 CCAAT-HAP5 Transcription Factor Family AT1G56170 87.692 9.48e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo20g1997 CBFD_NFYB_HMF 2.3e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1997 K08066 - gmx:100796987 394.815