Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1983 ATGTATTACAGCAGCAACAACAATTACCAGCCACAATCTCAGACTCTAAGCAGAAGATCAGATGATGGTTACAATTGGAGAAAATATGGTCAGAAACAAGTGAAAGGTAGTGAGAATCCAAGAAGTTACTATAAATGCACATTCCCGAATTGCCCAACAAAGAAGAAAGTTGAGAGATCCTTGGATGGACAAATCACAGAGATTGTTTATAAGGGTACTCATAATCACCCTAAGCCTCAGAATACTAGGAGAAACTCTTCATCTTCTTCTAATTCTACTGCTTTTGCAATTGCTCCCTCCAATCAAATGAACAACTCTGAGGTGACTGATCATCAATCTTATACACATGGTAGTGGACAAATGGATTCTATTGCCACCCTTGAGAACTCCTCAATTTCAGTTGGGGATGATGATTTTGAACAAAGCTCTCAGAGGTGTAAATCAAGTGGAGATGATTATGATGATGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGGGAAAATGAGGGAATATCAGGAGGTGGAAGTAGAACAGTGAGAGAACCAAGGGTTGTGGTTCAGACAACAAGTGACATAGATATCCTTGATGATGGCTACAGATGGAGGAAGTATGGCCAAAAAGTAGTTAAGGGCAATCCAAATCCAAGTCTAACTCAACTGTGTCATCATTTGGATTATGAAACAGATCTCGAGGATGTGAAGTATTGGAGTTGGCACAATGAGGTTGTTGGAGTTTGGATCGAGTCTCCATTTGGAACTGGGAACACCGCCAATGCTGCTCTGCTCTCTGCTCACCCAGTCTTCGTCAAGAATTTGTTTCAATATATGTTCAATTCAGTCGCAGAT 849 0.4052 MYYSSNNNYQPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSSSSSNSTAFAIAPSNQMNNSEVTDHQSYTHGSGQMDSIATLENSSISVGDDDFEQSSQRCKSSGDDYDDDEPDAKRWKIEGENEGISGGGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPSLTQLCHHLDYETDLEDVKYWSWHNEVVGVWIESPFGTGNTANAALLSAHPVFVKNLFQYMFNSVAD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1983 283 MobiDBLite consensus disorder prediction 140 168 - -
Amo20g1983 283 MobiDBLite consensus disorder prediction 134 178 - -
Amo20g1983 283 MobiDBLite consensus disorder prediction 1 20 - -
Amo20g1983 283 MobiDBLite consensus disorder prediction 70 119 - -
Amo20g1983 283 ProSiteProfiles WRKY domain profile. 21 79 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g1983 283 Gene3D WRKY domain 183 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g1983 283 MobiDBLite consensus disorder prediction 1 43 - -
Amo20g1983 283 Gene3D WRKY domain 5 80 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g1983 283 Pfam WRKY DNA -binding domain 197 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g1983 283 Pfam WRKY DNA -binding domain 21 77 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g1983 283 SUPERFAMILY WRKY DNA-binding domain 188 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g1983 283 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 10 216 - -
Amo20g1983 283 SMART WRKY_cls 20 78 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g1983 283 SMART WRKY_cls 196 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g1983 283 SUPERFAMILY WRKY DNA-binding domain 19 79 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g1983 283 MobiDBLite consensus disorder prediction 75 119 - -
Amo20g1983 283 ProSiteProfiles WRKY domain profile. 191 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g1983 283 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 216 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1983 Amo-Chr20 76858450 76861062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1983 18 222 WRKY Transcription Factor Family AT2G38470 62.385 1.19e-74 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo20g1983 WRKY 5.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1983 K13424 - aip:107621821 421.394