Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1982 ATGCCTGGCAGTTTAGAACCGTTGGATTTGGGGGTTCAGATTCCGTACCACTTCAGGTGCCCAATCTCGCTTGAGCTTATGCGAGACCCGGTCACTGTCTGCACCGGTCAGACCTACGACCGTCCAAGCATCGAGTCATGGGTGGCTACCGGCAACACCACCTGTCCGGTCACACGAGCACCGCTAACGGATTTCACTCTAATCCCTAACCACACACTCCGACGGCTAATCCAAGAATGGTGCGTCGCCAACCGTGCTTTTGGCGTCGAGCGGATTCCGACGCCGAAGCAGCCGGCAGACCCTTCGATGGTTCGCTCCTTGCTCAACCAAGCTTCGTCAGATTCCGCGCCGACTCAGCTCCGGGTCAACTCGCTCCGCCGACTCAGAGGACTCGCCCGCGACTCGGATAAGAATCGCTCTCTCATTGCTTCCCTCGGCGCCGTTCAGATCTTACTAACTGTCGTTTTCTCATGTAACGGTTCCGACGAGATGAACCATGAGGCGCTTGCGATTCTCGTGATGTTCTCGCTTGGCGAGAATGAATGCGAGTTTGTTGCATCTGATTTGGATAAGATCCGGTACCTGTCAATGCTTTTGTTTCATAGTTCCATGGAGGTCCGTGTTAACTCGGCCGCGTTGATCGAAATCGTTGCCGCCGGGACTCGGCTGCCTGAGCTCCGATCTCAGATCAGCAATGTCGACGAAATCTACGATGGCGTGATTGATTTGCTACGGAACCCGATATCGTTCCCGCGCGCGCTCAAGATTGGGATCAAGGCGCTGTTCGCGCTGTGTCTTGTGAAGCAGACCCGGCACAAGGCGGTGGCAGCGGGTGCGCCGGAGGTTCTCGTCGACAGACTCGCCGATTTCGAGAAGTGCGATGCTGAGAGAGCGCTTGCGACGGTGGAGCTCCTATGCAGAGTTCCGGCAGGGTGCGCGGCGTTCGCTGAACACGCGCTGACGGTGGCACTGCTGGTGAAGATAATACTGAAGATCTCAGAGCGCGCAACAGAGTATGCCGCCGGTGCGCTTCTGGCGCTGTGCTCGGAATCGGAGCGGTGCCAGAGAGAGGCGGTGGCTGCGGGTGTGCTGACTCAGCTTCTGCTTTTGGTCCAAAGCGATTGCACGGAGAGGGCGAAGAGGAAGGCGCAGCTGTTGCTGAAGCTGCTTCGGGATTCGTGGCCACAAGATTCCATTGGAAATTCTGACGAATTTGCATGCAGCCAGGTTTTGGTGGTGCCACTTTGA 1248 0.5697 MPGSLEPLDLGVQIPYHFRCPISLELMRDPVTVCTGQTYDRPSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPSMVRSLLNQASSDSAPTQLRVNSLRRLRGLARDSDKNRSLIASLGAVQILLTVVFSCNGSDEMNHEALAILVMFSLGENECEFVASDLDKIRYLSMLLFHSSMEVRVNSAALIEIVAAGTRLPELRSQISNVDEIYDGVIDLLRNPISFPRALKIGIKALFALCLVKQTRHKAVAAGAPEVLVDRLADFEKCDAERALATVELLCRVPAGCAAFAEHALTVALLVKIILKISERATEYAAGALLALCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDEFACSQVLVVPL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1982 415 Gene3D - 90 404 IPR011989 -
Amo20g1982 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Amo20g1982 415 CDD RING-Ubox_PUB 18 59 IPR045210 -
Amo20g1982 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Amo20g1982 415 SUPERFAMILY RING/U-box 12 90 - -
Amo20g1982 415 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Amo20g1982 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Amo20g1982 415 PANTHER WDSAM1 PROTEIN 4 410 IPR045185 GO:0061630
Amo20g1982 415 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 410 - -
Amo20g1982 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1982 Amo-Chr20 76765395 76767751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1982 1 412 U-box Gene Family AT3G19380 67.780 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1982 - - gmx:100778730 682.945