Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1957 ATGATGGCTACTCCAACTAAACCAATGGCCATAATGTTGTCTGAATCTTTGGAACACAAGGGAAAGGATATCACTGAATTAAATGGTAACATACTTCAATCCCCTATAAGTCAACAGCCCCATAGCTCCTCTGATGGTTCAGTAGCTATTCTTTGGGACATTGAAAACTGTCCTGTTCCGAGTGATGTCCGCCCTGAAGACGTAGCAGGAAATATAAGGATGGCGTTGCAAGTGCATCCASTAATTSAAGGAACTGTTATGGTATTTTCTGCTTATGGTGACTTCAACGCTTTCCCTAAGCGACTTAGAGAGGGATGTCTAAGAACTGGTGTTAATCTCATTGATGTTCCTAATGGGAGAAAAGATGCTGCTGATAAAGCAATCTTGGTTGACATGRTTTTATTTGCTCTTGACAACCCTCCCCCATCATCTATTATGCTAATATCTGGAGACGTMGACTTTGCCCGAGCACTTCACATTCTTGGACAACGGGGATACACTATAATTCTTGTCATCCCTTCTCGGATGGGTGTTTCATCTGCTTTATGCAATGCRGGAAAGTTTGTCTGGGATTGGCCTAGCGTTGCTCGTGGAGAAGGATTTGTTCCCCCGGCAAAGGCTTTAGTACCACCTCGTGGAGGTTCAGTTGAGGTTGCTGGATATTTGATGGGGTGCCATATTAATGACAACTTCGAGGGACAAAATGAGGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGATTATATAACTCAAGGGATTTCTCTATGGTTTCACAATCTCTATCTGAATACAATTGTACCGCATCGAACATGGCTGGCTTACCGACAACTATGAGATCACACAGCCTTCCACCTGGGATGATTGATGTTTCAGGAATATCTATGCCTTCTAGTGACAATAATGAAGGCCAGCTTTGGGGCCCTATGTCTAGCGATTTAAATGTTCTCAAAGGCCAGTTGGTAAGGTTGCTTGAACTTTCTGGAGGGTGCCTGCCTCTGGCTCGAGTTCCAACAGAGTATCAGAAAGCTTATGGAAGAACTCTTTATGTATCTGATTATGGAGCAATTAAYTTAGTCAATCTTTTCAAGAAGATGGGTGATACAYTGGCAGTGGAAGGGAAAGGTCAYCGTAAATTTGTGTATCTCAGAAACTTCAAGGTAGGCCCGAGCGCTCCCCCATTGGCTCTAGCAAAGAAAGACAAGAAAGGAAAGGGGCTTCCAGAAGAGAATATGAATACTGTCAACGGTGGTGGCTCTTCAGATGAGTTCTCAGATGAAGAAAGACTAGTCATGGAAGAACATGATGAGAGAAATTGTGTAGGAAAGGGCAGTCAAAGGAGAGCAGCTATCAATGACCGTGCTCTTGAGCAGTTCAAGTTCGAGCTTCAAGAGATTCTAGTCAGCTACTCGTGTCGAATATTCCTAGGTTGTTTTGAGGATATATACCAACAAAGGTACAAGAGACAATTGGAATATCAGAGACTTGGAGTGAACAAGTTGGAGGATTTGTTTGAGAAAGTCAATGATATTGTAGTATTGGTTGAGGAACCAGGAAGCAAGAGGAAGTTCCTTGCTCCAGTGGGGGGTTAG 1593 0.4294 MMATPTKPMAIMLSESLEHKGKDITELNGNILQSPISQQPHSSSDGSVAILWDIENCPVPSDVRPEDVAGNIRMALQVHPXIXGTVMVFSAYGDFNAFPKRLREGCLRTGVNLIDVPNGRKDAADKAILVDMXLFALDNPPPSSIMLISGDVDFARALHILGQRGYTIILVIPSRMGVSSALCNAGKFVWDWPSVARGEGFVPPAKALVPPRGGSVEVAGYLMGCHINDNFEGQNEEEAIVYRGMSQRLYNSRDFSMVSQSLSEYNCTASNMAGLPTTMRSHSLPPGMIDVSGISMPSSDNNEGQLWGPMSSDLNVLKGQLVRLLELSGGCLPLARVPTEYQKAYGRTLYVSDYGAINLVNLFKKMGDTLAVEGKGHRKFVYLRNFKVGPSAPPLALAKKDKKGKGLPEENMNTVNGGGSSDEFSDEERLVMEEHDERNCVGKGSQRRAAINDRALEQFKFELQEILVSYSCRIFLGCFEDIYQQRYKRQLEYQRLGVNKLEDLFEKVNDIVVLVEEPGSKRKFLAPVGG* 531
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1957 530 PANTHER - 20 525 - -
Amo20g1957 530 CDD LOTUS 314 383 - -
Amo20g1957 530 CDD PIN_limkain_b1_N_like 48 173 - -
Amo20g1957 530 Pfam OST-HTH/LOTUS domain 456 520 IPR025605 -
Amo20g1957 530 Pfam OST-HTH/LOTUS domain 315 381 IPR025605 -
Amo20g1957 530 CDD LOTUS 456 519 - -
Amo20g1957 530 ProSiteProfiles OST-type HTH domain profile. 455 529 IPR025605 -
Amo20g1957 530 ProSiteProfiles OST-type HTH domain profile. 313 385 IPR025605 -
Amo20g1957 530 Gene3D - 451 524 IPR041966 -
Amo20g1957 530 Gene3D - 311 382 IPR041966 -
Amo20g1957 530 Pfam NYN domain 48 187 IPR021139 GO:0004540
Amo20g1957 530 Gene3D - 41 193 - -
Amo20g1957 530 PANTHER LIMKAIN B LKAP 20 525 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo20g1957 Amo-Chr20 74302958 74306161 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1957 46 198 C2H2 Transcription Factor Family AT5G61190 43.791 2.07e-29 121