Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1934 GGCAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCGAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCCGTGCACCAGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTACTTCTTGGAAGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCATGGAGGGATGAGAAGTGTGGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTACTGTGTGGTTGCTCCAGATACTGAAATCTTCTGTGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAGAGGCTGGATGTAGTTGGATATGATGACGTGGGTAGAGTCAGGAAACAAATGGCACAAATTTGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGGTATTCTACTTTATGGACCCCCTGGTTCCGGGAAGACACTGATAGCAAGAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTGACTCTTATGGATGGATTGAAATCTCGTGCTCATGTTATCGTTATTGGAGCTACAAATCGCCCAAATATCATTGACCCAGCATTGAGAAGGTTCGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGCCAACTTAAA 954 0.4392 GKKRRDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVHGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDVVGYDDVGRVRKQMAQICELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNIIDPALRRFGRFDREIDIGVPDEVGQLK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1934 318 Gene3D - 48 141 - -
Amo20g1934 318 SMART AAA_5 176 312 IPR003593 -
Amo20g1934 318 ProSitePatterns AAA-protein family signature. 280 298 IPR003960 GO:0005524|GO:0016887
Amo20g1934 318 SMART CDC48_2_2 65 131 IPR004201 -
Amo20g1934 318 SUPERFAMILY ADC-like 1 45 IPR009010 -
Amo20g1934 318 SUPERFAMILY Cdc48 domain 2-like 47 138 IPR029067 -
Amo20g1934 318 Pfam Cell division protein 48 (CDC48), domain 2 67 128 IPR004201 -
Amo20g1934 318 Pfam Cell division protein 48 (CDC48), N-terminal domain 3 46 IPR003338 -
Amo20g1934 318 Gene3D - 1 47 - -
Amo20g1934 318 Gene3D - 142 310 IPR027417 -
Amo20g1934 318 PANTHER AAA-FAMILY ATPASE 1 317 - -
Amo20g1934 318 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 1 317 - -
Amo20g1934 318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 313 IPR027417 -
Amo20g1934 318 CDD AAA 175 309 - -
Amo20g1934 318 Pfam ATPase family associated with various cellular activities (AAA) 180 309 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1934 Amo-Chr20 72030517 72032033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1934 140 314 Calmodulin-binding Proteins AT3G56690 51.412 2.45e-49 174