Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1911 ATGCTCTGCTGCCTTCCCTTCTTTTTTGGATTTGCGGTTTTTCTTGGAATGCACTTCCCTTCATTAATGGCTGATTGCCCTTTGGATTTTTCCGCTTCAAACTTTACACTGGCTTCCTCTCTATGTTCTAACCAAGGTGATAGGGGAAACTGTTGCCGCTACATTAATGCTAATGTTGCAATTTCTGTTGCTCGTTTCGCTAATTCAACGAGCATCCTGGGGGTCCCTCCAAATGACTCTGTTTCCTGTCTCCAAACTATATCTGATAAGTTGCAACTTAATGGAGTTCCACAAAATGCAACAGCTTTCTGTGGTTTTGGGACCAAAATTCCTGTTAATTATGAATGTAAGGGACGGACTAGTGTCATGCAAATGCTGCAATCTCCTAGATTCGCGGAGGTCACAAAAAATTGCAAAGTGTCACTTGGAGAGGAAAGAAAATGTAGGAAGTGCTTAAATGCAGGCTTTGGTTATCTGCATCATTTGGGAATTAATGATAATATAACACTCAGTACTTGTCGTGATGCAACTTTTGCTGCACTTGCAAGCCAACTTGATCACCAATCTACAACTGACATTGCAAGCTGTTTCTTTGGTGTTCAAGGACTTCTTGGGCCTCCTGTGTCATCGTCCCCATCCTTGCCGAGTCCCGAGGCTTCTCCAAGTCCAGTGGTTGCTGATAGTCCAAGCCAACTATTGTTAGGTGCACCTTTTAAGGGAAACCACCATACATATCACTTGACATTAGTTCCAGGTATTGCTATTGCCGTCACCGCTGTTGCTGTTGGGATGCTCATAGTCTTGATAGTTCTAATTCGTAAAAAAAGCAGAGAGCTAGACGATCCTGATGATTTCGGAAAAACTTCTTCAAAAACCATGCCTCCTTTTGCAACATGGAAGTTTCAGGAAGGTTCTTCAACTATGTTCCGAAAATTTAGCTACAAGGAGATAAAGAAGGCAACAGAGGATTTTAGCACCGTCATCGGGCAAGGGGGATTTGGAACAGTGTATAAAGCTCATTTTAGTGATGGCCTGGTGGCAGCAGTGAAGCGCATGAACAGAGTGTCAGAGCAGGGAGAGGATGAGTTCTGCCGAGAAATCGAACTTCTTGCACGGCTGCACCATCGGCATCTTGTTTCTTTAAGAGGCTTCTGCATAAAAAAACACGAGAGGTTTCTGATGTATGAGTACATGGGAAATGGGAGCTTGAAAGATCATCTTCATTCTCCTGGTAGAACACCACTAAGTTGGCGAACTAGAATCCAAATTGCGATTGACGTAGCTAATGCATTGGTACATATGATTGATTAG 1311 0.4317 MLCCLPFFFGFAVFLGMHFPSLMADCPLDFSASNFTLASSLCSNQGDRGNCCRYINANVAISVARFANSTSILGVPPNDSVSCLQTISDKLQLNGVPQNATAFCGFGTKIPVNYECKGRTSVMQMLQSPRFAEVTKNCKVSLGEERKCRKCLNAGFGYLHHLGINDNITLSTCRDATFAALASQLDHQSTTDIASCFFGVQGLLGPPVSSSPSLPSPEASPSPVVADSPSQLLLGAPFKGNHHTYHLTLVPGIAIAVTAVAVGMLIVLIVLIRKKSRELDDPDDFGKTSSKTMPPFATWKFQEGSSTMFRKFSYKEIKKATEDFSTVIGQGGFGTVYKAHFSDGLVAAVKRMNRVSEQGEDEFCREIELLARLHHRHLVSLRGFCIKKHERFLMYEYMGNGSLKDHLHSPGRTPLSWRTRIQIAIDVANALVHMID* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1911 436 ProSiteProfiles Protein kinase domain profile. 322 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1911 436 Gene3D Transferase(Phosphotransferase) domain 1 291 434 - -
Amo20g1911 436 SMART tyrkin_6 322 435 IPR020635 GO:0004713|GO:0006468
Amo20g1911 436 Pfam SPARK 24 162 IPR043891 -
Amo20g1911 436 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Amo20g1911 436 PANTHER BNAC06G02630D PROTEIN 11 432 - -
Amo20g1911 436 SUPERFAMILY Protein kinase-like (PK-like) 302 434 IPR011009 -
Amo20g1911 436 PANTHER OS01G0750732 PROTEIN 11 432 - -
Amo20g1911 436 Pfam Protein tyrosine and serine/threonine kinase 325 434 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1911 Amo-Chr20 69266546 69270621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1911 20 431 Receptor kinase-like Gene Family AT1G49730 57.794 1.16e-166 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Amo20g1911 SPARK 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1911 - - ahf:112715638 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1911 20 69266546 69270621 Amo20g1911 20 69266546 69270621 ECH