Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1892 ATGAACCATGATCAGTTCTTTTTGAGCGGCGCCGACAGAAGCAAGAACGCAACCCATCTCAGCCGACGTTACTATATCATATTCTCACTGGCTCAAGTCGAGGTCCGCACCGGTGAACGCCCGAAAGCGCATTCCGAGCGTGTGACTCCTTCTGGCGGCACCGCATCATGTCCTTCCGAGCGTGTGGCTCCTTCCCTGGCCATGCCAAGATTGGATGTTACTGAGGTTGGAAGTGAAGAAATGGATATTTGTTACGAGGTTGGAAGTGAAGAGATGGATCCTGGTCACCAGGTACCGGATCACGATGGCCTTCGGAAAGATGAAATACCTTGTGTTGGAATGCGGTTTGATCAATTGCAAATGGCTCACAAATTCTATGTGACATACGCAAAGAAAGTCGGGTTTGCCACTAAGATACGGACAACAACCTGTGATAAGATCACAAATCAACCCATTAACCAAGCTATTCACTGTAATAGGGATGGGTACCGTGTGTCTCGTGTCAAAGCGTCAACGCGGAAGAACATGATCTCAGTCGCTGGGTGCAAGGCAAGGATATACGTGAAGTTTGACAAGGAGACGCAAGACTGGGTTTTCTTCAAGGTGGAGCTGAGTCACTCGCACCCATGTTCAGCGAGGAAGGCGGTGCACTACCATGAGTATAGGCAGCTGACCATGCATGCGAAGTGCTTTCTTTTTCTTTATGTAGACCTTTTTGATGATCGACGCATGTGGGTCCCAATATACTTCAAGGGTGAATTTTGGGCTTCCATGAGGAGTACGCAAAGGAGTGAGAGCATGCACTCATTCTACGGAAATTTCTTACACAGTCGGACTAGCTTGGTTCAATTTGTTCACGAATATGACAATGTGCTTGGAATTAAGGAGCAAAGGGAACTAGAGGATGACGCAGCAGACTCGAGGGGGTTATCCCTTCAGGAGTACACTACATGCGTGTTTAGGGATGTTCAAATAGAGTTTGTCAAGAAGGCTAATTGTAGGGTCTCTGTTGTTGCTGAAGAGGGGCCAGTTGTATGCATGAAGGTTGAAGAGGAAATACTAGTGAATGATACTATAAGTTGCGTTCCGTACGACGTCCACTTCGATCGATCCACGCAGGAGGTTCGTTGTGAGTGCAATCTATTTGAGAGTTCAGGAGTGTTATGCTGTCATTGTCTTGTAGCCTTCCATTATTACAAGGTGTATAAAGTACCTAATCGATATGTTCTCCCTCGTTGGAGTAAGAACATAAAGCGCAAGCATACTTATGTCAAGAGTAGTCACGACGTCAGCCGGTCGGATGAGAGTCATGATTTTGTAAATGATGACGAAGAAACAGCCTTGCTTCATGCTGCTCTAGAAGAAACAAGAGCTAAGCTGATTGCTCACCGTGCCAAGAAGAGTTCGAATGTTGCCGCTGTGATGGACATCCAAGCCCCATCGAAGGTCAACACAAAGGGCCGGCCAAAGAGTAAGAGGCTCGGTGCTGCCCTGGAGAAGTCATTTAAAAAATCTGCTCGGAGGAGAAACAAGCATGACCCCCCGGCTGATCCCGAACAAGTTGGTGGCTTCATATTAGTGGAAGAGGCTGGTTTCATGGGGTAA 1605 0.4735 MNHDQFFLSGADRSKNATHLSRRYYIIFSLAQVEVRTGERPKAHSERVTPSGGTASCPSERVAPSLAMPRLDVTEVGSEEMDICYEVGSEEMDPGHQVPDHDGLRKDEIPCVGMRFDQLQMAHKFYVTYAKKVGFATKIRTTTCDKITNQPINQAIHCNRDGYRVSRVKASTRKNMISVAGCKARIYVKFDKETQDWVFFKVELSHSHPCSARKAVHYHEYRQLTMHAKCFLFLYVDLFDDRRMWVPIYFKGEFWASMRSTQRSESMHSFYGNFLHSRTSLVQFVHEYDNVLGIKEQRELEDDAADSRGLSLQEYTTCVFRDVQIEFVKKANCRVSVVAEEGPVVCMKVEEEILVNDTISCVPYDVHFDRSTQEVRCECNLFESSGVLCCHCLVAFHYYKVYKVPNRYVLPRWSKNIKRKHTYVKSSHDVSRSDESHDFVNDDEETALLHAALEETRAKLIAHRAKKSSNVAAVMDIQAPSKVNTKGRPKSKRLGAALEKSFKKSARRRNKHDPPADPEQVGGFILVEEAGFMG* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1892 534 ProSiteProfiles Zinc finger SWIM-type profile. 364 400 IPR007527 GO:0008270
Amo20g1892 534 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 94 219 IPR031052 GO:0006355
Amo20g1892 534 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 238 460 IPR031052 GO:0006355
Amo20g1892 534 PANTHER OS03G0843700 PROTEIN 94 219 - -
Amo20g1892 534 PANTHER OS03G0843700 PROTEIN 238 460 - -
Amo20g1892 534 MobiDBLite consensus disorder prediction 38 60 - -
Amo20g1892 534 MobiDBLite consensus disorder prediction 480 522 - -
Amo20g1892 534 Pfam FAR1 DNA-binding domain 124 210 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1892 Amo-Chr20 67271259 67275104 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g1892 FAR1 4.9e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1892 - - ahf:112732819 499.975