Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1884 ATGGACGAAAAGTTTGACACCGCTGACAAAAAGGTGCTGGTTGATATTGTAAAATTGGCACAAAAGAGAGGACTGAAAGGCGAATTCGGAGAATGGAAAGAATTTTTGAACAGTCATGATAAAAAGTTTGGGGCAGGTGTCAGTGACCCATCGAAGAGGTCCCATGAGATATTGGCTGCATTTCTGAAAACATTTTCAAATGAGGATGATTTGAAGTTTTTTGACAACATATTGCGCCATCATTCAAATCAGTATTTACTGGACCAATTGAAAGACAATTCACATGATTCTCCCTATCAGAGTCTAGTCCAACTAACTCTTCAGCACCCCTTGTATCCATTGGATTATTCATTTCCATCAATTGATGAGGGATGGATAATTTTAAACCTTAGGAAAAAAAAGATAATGAAGTCAACTGAAATGTTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCATTAGTAAAAGTATGTGTGGTAGACCATAATTTAGAGGTCAAGCTAAATGAACTTGTGAAACCGGAGAAAGAAATTGTAGACTATAGAACAGAGATTACTGGTGTTTCTTCTCAAGATCTAGAGGCAGTCACATGCTCCTTATCTGATATACAGAAATCCATGAAGAAGTTGTTAGCAAATGGAGCCATATTAGTGGGACACAGTTTGCATAATGATCTCCGTGTGCTGAAGGTATATCATGTTAGAGTGGTTGATACTGCATATATCTTCCAATCCTCAGATGGATCACTTCACAGGAGACCTTCTTTAAATAATTTGTGCAAGACTGTGTTAGGTTATGAAGTTCGAAAAGATGGAGCTCCACATAATTGTCTAGATGATGCACGTGCAGCAATGAAACTTTTTCTTGCAAGGATCAAGCATGGTGTTGATAAAGATTTTCCGGTTCAACTTCAAGAGCCAGTTTCTGAAAGTGAGATGGCAAAGCTGCTGCTTCATAAGATACCAATTACTGTGAACAGCGAAACACTGGATAAAGTTCTTCCTGGAGACTACACAATAGAAGTGAAGCCTTCCAAGAAAGCAGGACAAGGAAATAAATACTCCGCCTTTGCTATATTTAAGAATCCAGTGGAAGCACACAATGCCTATGAATGTATCCAAGGCACTGAATTAAAGGATTCAAATGGGATTCCGCAGAAGCTTGTCAAATTTCAGCTAGATACAGGTATGACTGCAAGTATTTTCGTTCGGAAGATGATGACACGTGAGCCTCGTGACTCTGTTGCGTTGAAGAGAGGTTTACAAACGGACGATGAAGTCCATGTTTCCAAGAAATCAAAGTGTGACAATGACACCCAGTTGAAGGAGATTGAAGCCCTGAATGAACGATTGAAGGAAAGCGAGTCAGAGATTGAATCTTTGAGGGAACAGCTGAAACAGAAGGATCTTGACATCGAGTCTTTGAGGGTAGAATCGAGTAAGAAGGATTTTGAAATCAATATGCTCAATAAAATGGTAGCCTCCATAAAAAAGAGGGCAAGAAAGTAA 1521 0.3918 MDEKFDTADKKVLVDIVKLAQKRGLKGEFGEWKEFLNSHDKKFGAGVSDPSKRSHEILAAFLKTFSNEDDLKFFDNILRHHSNQYLLDQLKDNSHDSPYQSLVQLTLQHPLYPLDYSFPSIDEGWIILNLRKKKIMKSTEMFAVDCEMVLCEDGTEALVKVCVVDHNLEVKLNELVKPEKEIVDYRTEITGVSSQDLEAVTCSLSDIQKSMKKLLANGAILVGHSLHNDLRVLKVYHVRVVDTAYIFQSSDGSLHRRPSLNNLCKTVLGYEVRKDGAPHNCLDDARAAMKLFLARIKHGVDKDFPVQLQEPVSESEMAKLLLHKIPITVNSETLDKVLPGDYTIEVKPSKKAGQGNKYSAFAIFKNPVEAHNAYECIQGTELKDSNGIPQKLVKFQLDTGMTASIFVRKMMTREPRDSVALKRGLQTDDEVHVSKKSKCDNDTQLKEIEALNERLKESESEIESLREQLKQKDLDIESLRVESSKKDFEINMLNKMVASIKKRARK* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1884 506 SMART exoiiiendus 140 301 IPR013520 -
Amo20g1884 506 Coils Coil 441 482 - -
Amo20g1884 506 Pfam Exonuclease 143 292 IPR013520 -
Amo20g1884 506 Gene3D - 136 308 IPR036397 GO:0003676
Amo20g1884 506 SUPERFAMILY Ribonuclease H-like 141 297 IPR012337 -
Amo20g1884 506 PANTHER SMALL RNA DEGRADING NUCLEASE 1-RELATED 1 412 - -
Amo20g1884 506 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 1 412 - -
Amo20g1884 506 CDD REX1_like 142 293 IPR034922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1884 Amo-Chr20 67132478 67138140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1884 142 292 C2H2 Transcription Factor Family AT2G48100 32.099 5.49e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1884 K14570 - gmx:100785565 714.531