Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1872 ATGGCACTGAGTACGTACTTGAATGGAGATGCACTTCAAAATTCATTAATGTCAGATAATTTTACCACCAATTTTCATGAACTAACTGCACCAGAAGAACTTACACTTGACCATTATTACCACCAACACAACCAAGAAGGCTCGTTTCCTAACAACTTTTTCTTTGACCCTTATTTTGACCTTAATAATGAATTTTTCCATACTGAAATTTTGTCTTCTCATCAACTACTTGGTCCTGATTGCACTTCTTCTCATAACTCCTTTATCTCACCCAATGATCTCTTTCAGACTGAATATTCTAATGTTAACACCCTTCTTTCATGTCCCAAACGCCAAAAGTATTTTCATGAGGATGAGGAACTCCAACTCTCTCCTCCACTCAAGGAGTATGCATCGCCCAGTTTATTTGATGGGTTTATACTGAATTCATCTTCCTTATTACCATCAGAAGAAGCAGCATTAGCAGAAGAATTACTATTACCTGCAGCAGTAGCAGCACCGTCATCAGACTTCATGGTTCCTGAAGTTGTACGCAATGGTTTTTGTGTGGGAATTAATAATGAGAGCGAGAAAAAAGATAATGAGAGAACTATTTCTGCACAGAGCATAGCGGCAAGAGAGAGAAGAAGGAGAATCACAGAGAAGACACAAGAACTTGGAAAGTTGGTTCCAGGTGGACCAAAGATGAACACAGCTGAGATGCTCCATGCAGCTTCTAGATATGTGAAGTACCTTCAAACTCAAGTTGGTATGCTTCAACTAATGAACACACTCCAGTCTGAATGTCATTACTGCATCATCTCCTTACTTACTTGTATGCTTGTCCTTTTGAATCAAATGAAGGAGAATGAGTGTTTTTAA 861 0.3868 MALSTYLNGDALQNSLMSDNFTTNFHELTAPEELTLDHYYHQHNQEGSFPNNFFFDPYFDLNNEFFHTEILSSHQLLGPDCTSSHNSFISPNDLFQTEYSNVNTLLSCPKRQKYFHEDEELQLSPPLKEYASPSLFDGFILNSSSLLPSEEAALAEELLLPAAVAAPSSDFMVPEVVRNGFCVGINNESEKKDNERTISAQSIAARERRRRITEKTQELGKLVPGGPKMNTAEMLHAASRYVKYLQTQVGMLQLMNTLQSECHYCIISLLTCMLVLLNQMKENECF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1872 286 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 269 - -
Amo20g1872 286 Pfam Helix-loop-helix DNA-binding domain 202 246 IPR011598 GO:0046983
Amo20g1872 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Amo20g1872 286 SMART finulus 202 251 IPR011598 GO:0046983
Amo20g1872 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 260 IPR036638 GO:0046983
Amo20g1872 286 Gene3D - 193 264 IPR036638 GO:0046983
Amo20g1872 286 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 1 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1872 Amo-Chr20 65588223 65590684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1872 169 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 57.303 2.34e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo20g1872 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1872 - - aip:107610272 391.349