Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1866 ATGGCAGTGATGGATGAAAAAGATCATCATTTTCCTAAAGGAATGCGTGTTCTTGCTGTTGATGATGATCGAACATGTCTTATAGTTTTGAAGACTTTACTCCAAAAGTGTCATTATCAAGTGTTATCTGTAGATGATGATCCAAGAGTGATGATGAAGGGAATCATGCATGGAGCATGTTTCTATCTGGTGAAACCTGTTAGAATTGAGGAGCTGAAGAATATTTGGCAGCATGTAATTAGGAGGAACAAGCATGATTCCCAGGAGCCAGAAAAACCTAGTAACAACCACGAAAATCCTGATTCAGATCAGAGTTCAAAGGCAAATAAAAAGAGAAAGGAACAAGAAGATGAGGAGGAGGAGGAGGAGGATGAGAATGACCATGACAACGGTGATGATCCGTCGGCGCAAAAGAAGCCTCGCGTGGTTTGGTCCGTCGACTTGCACCACAAATTTGTCACTGCCGTCGAGCAATTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGACTTAATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGTCATCTTCAGAAATATAGGCTTTATCTGAGAAGAGTGAGCAACATGTCAAACCAACAACACTCTAACATTGGATCAGCCTTCAGCAGTGCAGACACATCATATCTGAGAATGAATCCTCTAAGCGGAATTGGACAATTACAAACACTCAATAATAACTCTGGTTATGGCTTAAGATCTTTTTCACCTTCTAACATGCTTAATAGATTCAACACTCCTTCAGCCCTCAATGCTCATGGTTTCAATTCCAATGATACCCAATTTCAGTTCCCATCTTCCGGCTTGCTCGGCCGCGGCCGCAGCAATAACAATCAGACTTATCTCTCCGGAGGAGGACTTAATTCTGTTCCAAACTTGAGCACTATCTTTGATTCTAAACAGAGTTTTGTTAGACAGAAACCAAGCTCTCCCATTTTGGGAGTTTCCAACAATGGTTTGATCTTGGAACAGAATCATCAAGGTGGAATCTATGATAATATTCCAAATTCTGTAGGATCTTCTTCCCAAGAACAAATTTCATTCCCTTCTTTACTTGATCATCATCATGGTAATAGTTGCAACAATGATATTTGGTCAAATGAATGCAACACTTTGATGAATTCTTCAACTTTTCAAGGTGGGAATCTTAGTGGTGCTTCATCAATCACTTCACTCTCTAGCCAATCCCATGATTCATTCACTGATTTGAATTTCCAAGGAGTGAATTTCACCAACAATAACAATAGTAACAATGTGCAATTTCAAGGGTGGAATAGTAACAATAATAACAATAATCAGAATGGAAATTACCATGCATTGAGTGGCCTTATTGATCCATTTTCAAATTCAAGCTTCAACAGAAACTTGGATTTTGATTTTTGTGATGCATCGCAAATGAAGCATGATGGGGTTATTGATTTGACTGAAGATTCTTCACTGAAGCCACATCAGTTGTACAAGACTCGGAACACTCACATTTCTAATAATGCTGGTTCCTTGGAAGACTTTGTCAATGAAATTATGAAACAGTTAACTTTCTATGCTTTCTCTTATTTAGTCTCTAAAAAATTTGCGACAAAATTTCCATCTTTAAAAATTTTAGTCTCCTGTGTCCATACTTTTTGGAGGTACTGA 1665 0.3838 MAVMDEKDHHFPKGMRVLAVDDDRTCLIVLKTLLQKCHYQVLSVDDDPRVMMKGIMHGACFYLVKPVRIEELKNIWQHVIRRNKHDSQEPEKPSNNHENPDSDQSSKANKKRKEQEDEEEEEEDENDHDNGDDPSAQKKPRVVWSVDLHHKFVTAVEQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLRRVSNMSNQQHSNIGSAFSSADTSYLRMNPLSGIGQLQTLNNNSGYGLRSFSPSNMLNRFNTPSALNAHGFNSNDTQFQFPSSGLLGRGRSNNNQTYLSGGGLNSVPNLSTIFDSKQSFVRQKPSSPILGVSNNGLILEQNHQGGIYDNIPNSVGSSSQEQISFPSLLDHHHGNSCNNDIWSNECNTLMNSSTFQGGNLSGASSITSLSSQSHDSFTDLNFQGVNFTNNNNSNNVQFQGWNSNNNNNNQNGNYHALSGLIDPFSNSSFNRNLDFDFCDASQMKHDGVIDLTEDSSLKPHQLYKTRNTHISNNAGSLEDFVNEIMKQLTFYAFSYLVSKKFATKFPSLKILVSCVHTFWRY* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1866 554 MobiDBLite consensus disorder prediction 83 138 - -
Amo20g1866 554 Coils Coil 105 127 - -
Amo20g1866 554 SUPERFAMILY CheY-like 13 87 IPR011006 -
Amo20g1866 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 195 IPR017930 -
Amo20g1866 554 MobiDBLite consensus disorder prediction 83 116 - -
Amo20g1866 554 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 42 518 - -
Amo20g1866 554 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 139 192 IPR006447 GO:0003677
Amo20g1866 554 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 41 IPR045279 GO:0009736
Amo20g1866 554 Gene3D - 41 128 - -
Amo20g1866 554 ProSiteProfiles Response regulatory domain profile. 1 80 IPR001789 GO:0000160
Amo20g1866 554 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 8 41 - -
Amo20g1866 554 SUPERFAMILY Homeodomain-like 137 196 IPR009057 -
Amo20g1866 554 Pfam Myb-like DNA-binding domain 141 191 IPR001005 -
Amo20g1866 554 Gene3D - 135 198 - -
Amo20g1866 554 PANTHER TWO-COMPONENT RESPONSE REGULATOR 42 518 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1866 Amo-Chr20 65208957 65212512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1866 10 267 Response Regulator Gene Family AT2G25180 42.368 1.06e-66 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo20g1866 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1866 - K14491 adu:110273068 916.376