Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1856 GTCAATGCACGTTTTGACTGTGCCATCGCTGCCGCTAGAAGAGCACTCAACCGCAACAAAGGCAACGACTGGCCTTCTGCTTTCGGCGCTCATCGAGCCCGCTATCTCCGCGCCATCGCTGCCAAGGTCGTCGAGAGAAAGGATCACCTCGCTAAGCTTAAATCCCTTGATTGCGGAAAACCACTCGATGAAGCTGCCTGGGACATGAATGATGTTGCTGGTTGCTTCGAGTTTTACGCTGACCTTGCCAAGAACCTCGACGCTAAGCAGAAGGCACCTGTTTCTCTTCCCATGGAAACTTTCAAGATTTATGTCCTCAAAGAATCCATTGGTGTTGTTGGATTAATCACCCCATGGTATTTTCTTTCTCTTCTCTTTAAAATTTGCCTTATTAACTGGAACTATCCTCTATTAATGGCTACATGGAAGGTTGCCCCTGCTCTGGTTCTTCATTTTTTTGATTTTTCTAAACTACTCAAAAAGGTGAAAGAGATATACAATTTTTCCCAGGATGATCTGATGACAGAAGATATATTCATCTTGGGTTGTCACTCTGAAATCTTTGTCTGGGTTGGCCAGGGAGTTAACCCCAAGAGCAGAATGCAGTCTCTAACCATTGGTGAGGCCAACAATGCTTACATATTCCCTGGTTTTGGCTTGGGTTTGATTATCTCAAGTGCAATCTGCGTCCGCGATGAGATGCTCTTGGCAGCCTGTCTTGCTTCTCATCTACCTCGACCTAAGGATCTTGTCAAATATGCAGAAAGTTGCATGTACAGCCCTGGCTACAGAAACTACCATTGA 804 0.4552 VNARFDCAIAAARRALNRNKGNDWPSAFGAHRARYLRAIAAKVVERKDHLAKLKSLDCGKPLDEAAWDMNDVAGCFEFYADLAKNLDAKQKAPVSLPMETFKIYVLKESIGVVGLITPWYFLSLLFKICLINWNYPLLMATWKVAPALVLHFFDFSKLLKKVKEIYNFSQDDLMTEDIFILGCHSEIFVWVGQGVNPKSRMQSLTIGEANNAYIFPGFGLGLIISSAICVRDEMLLAACLASHLPRPKDLVKYAESCMYSPGYRNYH* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1856 267 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 265 IPR036291 -
Amo20g1856 267 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 147 206 IPR036180 -
Amo20g1856 267 Gene3D Severin 151 256 IPR029006 -
Amo20g1856 267 SUPERFAMILY ALDH-like 5 149 IPR016161 GO:0016491
Amo20g1856 267 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 5 149 - -
Amo20g1856 267 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 2 150 IPR016162 GO:0016491
Amo20g1856 267 Pfam Aldehyde dehydrogenase family 4 149 IPR015590 GO:0016491
Amo20g1856 267 Pfam Malic enzyme, NAD binding domain 202 239 IPR012302 GO:0051287
Amo20g1856 267 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 5 149 - -
Amo20g1856 267 Pfam Gelsolin repeat 165 199 IPR007123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1856 Amo-Chr20 63939593 63941917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1856 6 148 Aldehyde Dehydrogenase Gene Family AT1G74920 72.028 2.02e-63 205