Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1840 ATGGATGCAAAGCGCACACTCCGTGAGATTAAACTCCTGAGGCATCTGGATCATGAAAACAGCATTTGGTTTGTCTCCTTGTTTGCATTGTGTGAGGATTATGCAATTTGCTTTTTGCTTTCAACCAGAATGGAATCACACAATTACATGGCAAGTGCCAAATCTGTATCTCTTTATTGTATAAGTTCAGGAGTTTCTCAATCTGCCATTCTGCACTCTTTTGTAAATTCAATTTCGGCCAGAAGCAATTCTCTACTTGTTGTTTCGGTTTCACTCAACCTTGAAAAAGGTGCAATTCTTTTGGAGAATTCTGGTAGTTTGTACAAGGTGAAATCCGAGATGAAGTATGCCATGAAAATAAAAGATGGGGACTGGAATTTTGATTTGCATGATCTGCTGTTATGTTTCGGTGTAAAAGAATTCTTGGTTATTGCTCCTCAAAGTGCAAGTGGTGTGCTTCTTGATGCACCTGAAGCTAGCAAGCTCTTGAGTGCTGTCGCAATTGCTTTGTCAAATTATTCAAGATGGTGGCTGAGTAATCCTATTCTACCCAAGCCTGCTTGCAAAAGGGGTTTTGATTTGCGTCTGCTTTTCTCATGTCATACACTTTGGCTTATTGAAAAAGAAACACAAAAGCATAAAGCAAAACAAAAATCAGATTCTCATTACATGAAGGCCCAAAGTGCTGGTCAATTTATGATTTATGTGCATTCCAAGATGATGATAGTGGATGATGAATACATAATCATTGGATCTGCTAATATCAACGAGAGATTAATGAATGGTAGAAGAGACACTTTAATTGCTATGGGAGCTTATCAACCCTCCTATTTGGCAACCAATAAAAATAGTGCAAGGGGCCAGATCCATCGCTTTCACTTGTCCTTGTGGTACGAGCATCTTGGCATATATAAAGAAACTTTCCTCAACCCTGAACTTGAAGGTTGTATTAGAAGGGTCCATCAGCTTGCTCAAAACAATTGGAACAGATATACAGGACAACCATTATGCACTTGTGGCCACCTCCTGCGCTATCCCATTGACATTTCTCTTGATGGAAGTATCACACATGATCCTGAAATATTCCCCGACACCTATGCAAGAATTCGAGGTAGTCAACACTTAGATAGTTCGGTGGTTCAAAGCCGTCGATTTTATTAA 1161 0.3953 MDAKRTLREIKLLRHLDHENSIWFVSLFALCEDYAICFLLSTRMESHNYMASAKSVSLYCISSGVSQSAILHSFVNSISARSNSLLVVSVSLNLEKGAILLENSGSLYKVKSEMKYAMKIKDGDWNFDLHDLLLCFGVKEFLVIAPQSASGVLLDAPEASKLLSAVAIALSNYSRWWLSNPILPKPACKRGFDLRLLFSCHTLWLIEKETQKHKAKQKSDSHYMKAQSAGQFMIYVHSKMMIVDDEYIIIGSANINERLMNGRRDTLIAMGAYQPSYLATNKNSARGQIHRFHLSLWYEHLGIYKETFLNPELEGCIRRVHQLAQNNWNRYTGQPLCTCGHLLRYPIDISLDGSITHDPEIFPDTYARIRGSQHLDSSVVQSRRFY* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1840 386 Pfam PLD-like domain 185 268 IPR025202 -
Amo20g1840 386 Pfam Phospholipase D C terminal 306 372 IPR024632 -
Amo20g1840 386 PANTHER PHOSPHOLIPASE D 211 375 IPR015679 -
Amo20g1840 386 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 232 259 IPR001736 GO:0003824
Amo20g1840 386 SUPERFAMILY Phospholipase D/nuclease 187 314 - -
Amo20g1840 386 PANTHER PHOSPHOLIPASE D ALPHA 3 211 375 - -
Amo20g1840 386 Gene3D Phosphorylase Kinase; domain 1 1 61 - -
Amo20g1840 386 Gene3D Endonuclease Chain A 194 275 - -
Amo20g1840 386 SMART pld_4 232 259 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1840 Amo-Chr20 62643144 62646204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1840 191 371 Phospholipase D Gene Family (Wang group) AT1G52570 53.191 2.00e-53 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1840 K01115 - ahf:112749031 400.208