Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1827 CCAGATCTCAGTGAAAATTTGGGGTTGCAGGATGAAACTCGTGATAAACTTGGTGCAGAGTTCCACAAGAAGTTGGATTTGAAAGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGGACTTTGTAGCTGGTAGTGAGGAATTGGGTGATGAAGGTGGTTGTACCCCGGAAATAGGTGAAGCACAAGAGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATGGCTGGAATAAGAATGTGAAAGAGAGTGAGATTGATAAGGTAAGTGGAGATTTTGATGTTGATGGTGATAGTAATGGTGATGATGAAGTTCAAGTTGAAGGTGATGAAGAACAATATCCACTAAGGCCTGATACTGAAGATTGTGCTTTCTATCTTAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTAGTAGGAGGAAGAACCAGATATTAATTATTCTTCTGTTCCTATTATCATTC 495 0.3899 PDLSENLGLQDETRDKLGAEFHKKLDLKDEDERVAENEKKDSDFVAGSEELGDEGGCTPEIGEAQESDDNDGWDDDEGYGWNKNVKESEIDKVSGDFDVDGDSNGDDEVQVEGDEEQYPLRPDTEDCAFYLKTGTCKFGFNCKFNHPLSRRKNQILIILLFLLSF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1827 165 ProSiteProfiles Zinc finger C3H1-type profile. 121 149 IPR000571 GO:0046872
Amo20g1827 165 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 14 154 - -
Amo20g1827 165 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 147 IPR000571 GO:0046872
Amo20g1827 165 SUPERFAMILY CCCH zinc finger 120 150 IPR036855 GO:0046872
Amo20g1827 165 PANTHER PROTEIN PHOSPHATASE RELATED 14 154 - -
Amo20g1827 165 MobiDBLite consensus disorder prediction 28 115 - -
Amo20g1827 165 MobiDBLite consensus disorder prediction 76 99 - -
Amo20g1827 165 MobiDBLite consensus disorder prediction 28 47 - -
Amo20g1827 165 SMART c3hfinal6 121 148 IPR000571 GO:0046872
Amo20g1827 165 Gene3D - 90 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1827 Amo-Chr20 61515914 61516450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1827 104 150 C2H2 Transcription Factor Family AT1G29570 44.000 1.15e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo20g1827 zf-CCCH 1.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1827 - - adu:110280340 227.254