Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1826 AAGTTTCTCACAATCACTCTTTCTCTCTCTCCCCCCACACACATAGACACTCTCTCTAGTCTGTCTCTTACTATGGCCATGAGTGTTGAGAATCAAGACCCTAATGACATAGGATTCTTTTGGGATAACCAACCATGGGATGTCTCAAATTTTGATAACTTAGGTCAAAGAGAAACCAAAGAGAACCTACATATAGAAATGCCTCCTCTGCCACCAGCTCCTACCAACCACCTCACACAGGGAGAAATAGAGAAGAAAAATGAAGAATTAACGATGCCGGTTACAAGCAACAAGAAGCGACGCCGAGCTGACGAAGATGGCAAGAGGCCTATGAAGAATGATGGTAATGATCATGATCTCCATATATGGACAGAGAGAGAACGAAGGAAGAAAATGAGGGACATGTTTGCTAATCTTCATGCTATGCTTCCTCAACTTCCTCCTAAGGCAGACAAGTCATCCATTGTGGATGAAGCAGTGAGGCACATCAAAACTCTGCAACAAACGGTTGAGAATCTCGAGAAAAAAAAGCGACAGAGGATTCAATCTCTCTCTGTCTCTGTGTCACCAATTGCGTGCGAATCTGCTGTGACCAACCCTCAGTGGAACCCTTACGACTCATCATCCTTGTCAAGAGATAATAATGCATTAACTATAACCGCCACTCAACATGTTTCTGCTGCTGTTGCAAATAATTCACCGTTTTTTAAGACTTGGGCTTCACAGAATGTGGTACTGAACATGTGTGGAGAGGAAGCACAGTTCAGCATATGTGCAGAGAAGAAGCCTAGTCTCTTCACCACCATTGCTTTTGTGCTCCAGAAGCATAAGGTTGACGTCATTTCTGCTAGTATCTTGTGCAATCATAATGTCAATAGATACATGGTCCTTACTCATGCAAGTAGGGCTTTACTTCAATTTGCAGACGCAAATACAGTGGAGGAAACTTTCAAGCGTGCAGCTGAGGAGATTATGATGTGGCTCGGCTAA 990 0.4333 KFLTITLSLSPPTHIDTLSSLSLTMAMSVENQDPNDIGFFWDNQPWDVSNFDNLGQRETKENLHIEMPPLPPAPTNHLTQGEIEKKNEELTMPVTSNKKRRRADEDGKRPMKNDGNDHDLHIWTERERRKKMRDMFANLHAMLPQLPPKADKSSIVDEAVRHIKTLQQTVENLEKKKRQRIQSLSVSVSPIACESAVTNPQWNPYDSSSLSRDNNALTITATQHVSAAVANNSPFFKTWASQNVVLNMCGEEAQFSICAEKKPSLFTTIAFVLQKHKVDVISASILCNHNVNRYMVLTHASRALLQFADANTVEETFKRAAEEIMMWLG* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1826 329 Pfam Helix-loop-helix DNA-binding domain 124 167 IPR011598 GO:0046983
Amo20g1826 329 PANTHER - 35 327 IPR044278 GO:0003700|GO:0006355|GO:0009960
Amo20g1826 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 187 IPR036638 GO:0046983
Amo20g1826 329 Gene3D - 116 187 IPR036638 GO:0046983
Amo20g1826 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 166 IPR011598 GO:0046983
Amo20g1826 329 Coils Coil 156 183 - -
Amo20g1826 329 SMART finulus 124 172 IPR011598 GO:0046983
Amo20g1826 329 MobiDBLite consensus disorder prediction 85 118 - -
Amo20g1826 329 PANTHER TRANSCRIPTION FACTOR BHLH95 35 327 - -
Amo20g1826 329 CDD bHLH_AtbHLH_like 121 174 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1826 Amo-Chr20 61507070 61511046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1826 46 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.390 7.99e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo20g1826 HLH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1826 - - adu:107469983 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1826 20 61507070 61511046 Amo20g1826 20 61507070 61511046 ECH