Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1788 ATGGATCAAAGTGGTGGAATTGCGACTGGGCCGCGCGATGTCCTAGGAGTTAGGAACGGTTCCGACATTGGGTGTAAACCCTTGAAGAATTTGAATGGTAAAATCTGTCAGATATGTGGCGATACTGTTGGATTAACAGCCACCGGTGATGTTTTTGTTGCTTGCCAAGAATGTTCCTTCCCACTTTGTCACCGTTGCTATGAATGTGAGTGCGAGAATGGGAACCAATCTTGCCCCCAGTGCAAGACCAGATACAATAGTCACAAAGATAGTTCCCATTTGGAGGGAGATGAGGATGATTATGAAGATGATGATGATGTTGATGATATAGAGAATGAGGTAAATTATGGAGAAGGAAACATTAACAAAGCAGGGATGCAATGGGAAGAAGATGCTGACCTCTCTTCTTCGTCGGGACATGATTCTCGGATGCCAAATTCAAATCTCCATATCACAAATGGGCAGCCGCTATCTGGTGAAAAACCGTGTGCTACTCCTGATACAAAATCTGTTCAAGCTACATCTGGTCCTTTGGGTCCTTTGGGTCCATCCAAGGCTCACTCACTTTCCTACACCGATTCAAAGCAGCCAGGTCTTGAGAGTGATGAAGAGGTCAGAAGAGTGCCAGAGATCGGAGGTGAATCTGCTGGACCTTCAGCTTCCCGTCCAGGCGCCGGTCCAACTGGTGGGAAAGAACGTGGTCAGGGGACTGGGGATGGTCAACGGAAGAGAGGCAGAAGCCCGGCAGACAAAGAAAACAAACGGCTAAAGAGGCTACTGAGGAACAGAGTGTCAGCTCAACAAGCAAGGGAGAGGAAAAAGGCATATTTGATCGATTTGGAAACCAGAGTCAAAGACTTGGAGAAGAAGAACTCAGAGCTCAAAGAGAGGCTTTCCACTTTGCAGAATGAGAACCAAATGCTAAGACAAATATTAAAGAATACAACAGCTAGCAGGAGAGGGAGCAACAGTGGTACAAATGCTGAATGA 990 0.4646 MDQSGGIATGPRDVLGVRNGSDIGCKPLKNLNGKICQICGDTVGLTATGDVFVACQECSFPLCHRCYECECENGNQSCPQCKTRYNSHKDSSHLEGDEDDYEDDDDVDDIENEVNYGEGNINKAGMQWEEDADLSSSSGHDSRMPNSNLHITNGQPLSGEKPCATPDTKSVQATSGPLGPLGPSKAHSLSYTDSKQPGLESDEEVRRVPEIGGESAGPSASRPGAGPTGGKERGQGTGDGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNAE* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1788 329 Pfam Zinc-binding RING-finger 26 101 IPR027934 -
Amo20g1788 329 CDD bZIP_HY5-like 255 306 - -
Amo20g1788 329 SMART brlzneu 250 314 IPR004827 GO:0003700|GO:0006355
Amo20g1788 329 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 257 272 IPR004827 GO:0003700|GO:0006355
Amo20g1788 329 MobiDBLite consensus disorder prediction 236 271 - -
Amo20g1788 329 Coils Coil 249 318 - -
Amo20g1788 329 MobiDBLite consensus disorder prediction 89 271 - -
Amo20g1788 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 110 IPR013083 -
Amo20g1788 329 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 168 320 - -
Amo20g1788 329 SUPERFAMILY RING/U-box 22 107 - -
Amo20g1788 329 MobiDBLite consensus disorder prediction 96 113 - -
Amo20g1788 329 Pfam bZIP transcription factor 251 312 IPR004827 GO:0003700|GO:0006355
Amo20g1788 329 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 252 315 IPR004827 GO:0003700|GO:0006355
Amo20g1788 329 Gene3D Single helix bin 273 314 - -
Amo20g1788 329 ProSiteProfiles Zinc finger RING-type profile. 36 82 IPR001841 -
Amo20g1788 329 SUPERFAMILY Leucine zipper domain 254 312 IPR046347 GO:0003700|GO:0006355
Amo20g1788 329 MobiDBLite consensus disorder prediction 138 177 - -
Amo20g1788 329 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 168 320 IPR044280 GO:0000981|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1788 Amo-Chr20 56018340 56023916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1788 196 311 bZIP Transcription Factor Family AT5G11260 72.650 2.44e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo20g1788 zf-UDP 8.6e-34 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1788 K10999 - aprc:113855639 471.085