Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1752 GGCGATGGCACGGTGCTCTCCACAAGTCCTAACATAGCCACTGCAACAACGCACAGACCCTTTCTCCCCTTCCTAACGGCGACAGCAGCGCTCAATCGCGGTGCTCTCCTTGACAAGCGCGGTGCTCAATTGCAAGAAACCCCTCTCCCTTCTCCTTCTCGTTCTTCCTCTTCCTCTAGTGAGCATGAAAGATGGCACCAACTCTACCTTGGACCTTTTGATGGATTCTTAATCTCAATTAACTTGGAACAATTTGATTATTCCTTGAGCTATGCTAATACATCTTGTCCGAGGCATTTTAGAAAGTTGTTTGGAAGGAGTGACACAGGCAACAAAATTGGGACCTATGGCATTACCTTGTGTACCAATTTTCATAATGTACCTTTTTATGTGGCTGCACCGCTGACTTCAATTGATCTATCACTTTCTTTCGGAGAAGAAATCGTCATCGAGGAGAGATCTCCGAAGGAGTTGTTGAACATGCGAGGAGGACTTGGAGAGCAAGTTGCTGCCTCATGA 519 0.4663 GDGTVLSTSPNIATATTHRPFLPFLTATAALNRGALLDKRGAQLQETPLPSPSRSSSSSSEHERWHQLYLGPFDGFLISINLEQFDYSLSYANTSCPRHFRKLFGRSDTGNKIGTYGITLCTNFHNVPFYVAAPLTSIDLSLSFGEEIVIEERSPKELLNMRGGLGEQVAAS* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1752 172 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 107 172 - -
Amo20g1752 172 SUPERFAMILY NagB/RpiA/CoA transferase-like 108 163 IPR037171 -
Amo20g1752 172 Gene3D - 102 172 IPR042529 -
Amo20g1752 172 Pfam Initiation factor 2 subunit family 108 163 IPR000649 GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1752 Amo-Chr20 51554477 51556640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1752 108 171 Eukaryotic Initiation Factors Gene Family AT2G05830 71.875 2.52e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1752 K08963 - aip:110263737 163.31