Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1722 ATGAAGTTGGTGAAGAGTTCACGAGGTTCCTTGCTTATTAGGTTCTTGCAAGTTCGTTTCCATATCTTTGGTCCCTTTCACATTCACCCAACTCTCATCAATCCTCAACCACTTCTTCTTCTTCTTCATCATCTTCTTGTTCTTGGATTGAGAAAAATGGATCATAGAAGCGGAGGAGGAGGAATGGACATACCCATAATGCATGAGAGTGATCGCTATGAGTTAGTTAGAGATATTGGTTCTGGAAACTTCGGGGTCGCCAGGCTCATGAGGGATAAGCACACCGACCAACTTGTTGCCGTTAAGTATATTGAGAGGGGTGAAAAGATCGATGAAAATGTACAGAGGGAAATTATAAATCACAGGTCACTAAGGCATCCCAATATTGTGAGGTTCAAGGAGGTTATATTGACCCCAACGCATTTGGCTATTGTCATGGAATATGCCTCGGGAGGAGAGCTATTTGAACGAATATGCAATGCAGGGCGCTTTAGTGAGGACGAGGCACGTTTCTTCTTCCAACAACTTATATCTGGGGTTAGCTACTGTCATGCAATGGTACATAATTGTCATCGTGATTTGAAGTTGGAAAATACATTGTTGGATGGTAGTCCAGCTCCTCGCTTGAAGATTTGTGATTTTGGTTATTCAAAGTCTTCAGTGCTACATTCACAACCAAAATCTACAGTTGGCACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTAACCTTATATGTGATGTTGGTTGGTGCTTATCCATTTGAGGATCCAGAGGAACCTAAAAATTTCCGCAAAACAATACACAGGATTTTGAATGTCCAATATTCAATTCCTGACTATGTTCATATATCTCCTGAGTGCCGCCATTTGATCTCAAGGATTTTTGTTGCTGATCCTGCACAGAGAATAAGTATACCGGAGATCAAAAACCATGAATGGTTCTTGAAGAATCTACCAGCTGATCTCATGGATGGGGACACAATGAGCAACCAGTATGAGGAGCCTGATCAACCGACGCAAAGCATTGAAGAGATCATGCAGATAATATCCGAGGCCATGATTCCTCCGGCCGGAAGCCAGTCCCTCAACCAGTACCTCACCGGAAGCTTGGACATTGACGATGACATGGATGAGGATCTAGACAGTGATCCTGACCTTGACCTTGATAGCAGTGGAGAAATTGTCTATGCTATGTAA 1245 0.4297 MKLVKSSRGSLLIRFLQVRFHIFGPFHIHPTLINPQPLLLLLHHLLVLGLRKMDHRSGGGGMDIPIMHESDRYELVRDIGSGNFGVARLMRDKHTDQLVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMVHNCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAQRISIPEIKNHEWFLKNLPADLMDGDTMSNQYEEPDQPTQSIEEIMQIISEAMIPPAGSQSLNQYLTGSLDIDDDMDEDLDSDPDLDLDSSGEIVYAM* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1722 414 Gene3D Transferase(Phosphotransferase) domain 1 149 338 - -
Amo20g1722 414 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Amo20g1722 414 Gene3D Phosphorylase Kinase; domain 1 53 148 - -
Amo20g1722 414 ProSiteProfiles Protein kinase domain profile. 73 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1722 414 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 63 409 - -
Amo20g1722 414 PANTHER SERINE/THREONINE KINASE 63 409 - -
Amo20g1722 414 SUPERFAMILY Protein kinase-like (PK-like) 67 372 IPR011009 -
Amo20g1722 414 SMART serkin_6 73 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1722 414 Pfam Protein kinase domain 73 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1722 Amo-Chr20 49576353 49579941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1722 66 355 CBL-interacting serine-threonine protein kinases AT4G24400 40.461 1.26e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Amo20g1722 Pkinase 3.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1722 K14498 - qsu:112032862 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1722 20 49576353 49579941 Amo20g1722 20 49576353 49579941 ECH