Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo20g1710 | TCAGCCAAGCCTCACAACACTTCCCTAGCCCCACCGCCGGCCGAGCAAGAGCACCTGCCGTGCCCTCCCTGCGACTCTACTAATACCAAGTTCTACTACTACAACAACTACAACTTCTCCCAGCCTCGCCACTTCTGCAAGTCCTGCCGCCGCTATTGGACCGACGGCGGCACTCTCCGTGACATCCCCGTCGGCGGTGAAAGCCCACCCGTGCAGTTCGGTGGATTAGTTGTGGATGGTGAAGCAAAGGGTAATAACGTGAGCTTGTGCGGTGGGAGCTTCACTTTGTTGCTGAGCAACACACAGCAGGGTCCTGGTGGGTTTCTGGCTCTGGGTGGGTTCGGGCTTGGTCTTGGGCCTGGGCTCGAAGATGTTGGATTTGGGATGGGGAGAGGCGGTTGGGCTTTCCCGGACATGGTGGCGGACGGAGGCAGCATTGGCGGCGGTGTTGCGGGCTCCGGTGTTGGGCACACGTGGGGTGAGGGGGAGTGGGGTGATGGGGTGAGGGATGGGGGGTGA | 519 | 0.6108 | SAKPHNTSLAPPPAEQEHLPCPPCDSTNTKFYYYNNYNFSQPRHFCKSCRRYWTDGGTLRDIPVGGESPPVQFGGLVVDGEAKGNNVSLCGGSFTLLLSNTQQGPGGFLALGGFGLGLGPGLEDVGFGMGRGGWAFPDMVADGGSIGGGVAGSGVGHTWGEGEWGDGVRDGG* | 173 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo20g1710 | 172 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 80 | 162 | IPR045174 | GO:0003700|GO:0006355 | |
Amo20g1710 | 172 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 3 | 69 | IPR045174 | GO:0003700|GO:0006355 | |
Amo20g1710 | 172 | Pfam | Dof domain, zinc finger | 17 | 67 | IPR003851 | GO:0003677|GO:0006355 | |
Amo20g1710 | 172 | PANTHER | DOF ZINC FINGER PROTEIN DOF3.4 | 80 | 162 | - | - | |
Amo20g1710 | 172 | PANTHER | DOF ZINC FINGER PROTEIN DOF3.4 | 3 | 69 | - | - | |
Amo20g1710 | 172 | ProSiteProfiles | Zinc finger Dof-type profile. | 19 | 73 | IPR003851 | GO:0003677|GO:0006355 | |
Amo20g1710 | 172 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo20g1710 | Amo-Chr20 | 49135690 | 49136349 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo20g1710 | 8 | 151 | C2C2-Dof Transcription Factor Family | AT5G66940 | 42.541 | 7.45e-35 | 120 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Amo20g1710 | zf-Dof | 9.1e-29 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo20g1710 | - | - | aip:107620759 | 283.493 |