Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1687 ATGGCAAAACCTATACCCAAAATTGGTTCGCGTAAAAATGGACGTATTGGTTCACGTAAACATGCTCGTAAAATACTAAAGGGCGTTATTCATGTTCAAGCTAGTTTCAACAATACCATTGTCACTGTTACCGATGTACGGGGTCGGGTAATTTCGTGGTCCTCCGCAGGTACTTGTGGATTCAAAGGTACACGAAGGGGAACACCATTTGCCGCCCAAACCGCAGCAGGAAATGGTCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGCATACTCTTAAATTTTATACGGGATATAACCCCTATGCCACATAATGGGTGTAGGTCCCCTAAAAAATGA 354 0.4463 MAKPIPKIGSRKNGRIGSRKHARKILKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNGPGLGRDAALRAIRRSGILLNFIRDITPMPHNGCRSPKK* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1687 117 MobiDBLite consensus disorder prediction 1 20 - -
Amo20g1687 117 Hamap 30S ribosomal protein S11 [rpsK]. 11 117 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo20g1687 117 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 1 117 - -
Amo20g1687 117 SUPERFAMILY Translational machinery components 24 117 - -
Amo20g1687 117 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 6 78 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo20g1687 117 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 77 117 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo20g1687 117 Pfam Ribosomal protein S11 79 117 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo20g1687 117 Pfam Ribosomal protein S11 28 77 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo20g1687 117 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 1 117 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo20g1687 117 Gene3D Ribosomal protein S11 78 117 IPR036967 GO:0003735|GO:0005840|GO:0006412
Amo20g1687 117 Gene3D Ribosomal protein S11 9 77 IPR036967 GO:0003735|GO:0005840|GO:0006412
Amo20g1687 117 ProSitePatterns Ribosomal protein S11 signature. 88 110 IPR018102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1687 Amo-Chr20 48222762 48223169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1687 28 110 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 33.636 4.66e-11 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1687 K02948 - gmx:3989330 214.157